blob: 7e519fd04313e6bd57527449e01267a875e270c1 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
|
# Genebank Metadata
## 'genbank'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT Genbank.Id, Genbank.Sequence, Species.Fullname FROM Genbank LEFT JOIN Species USING (SpeciesId)
```
The above query results to triples that have the form:
```text
genbank:Genbank(Id) -> gnt:hasSequence -> Genbank(Sequence)
genbank:Genbank(Id) -> xkos:classifiedUnder -> gn:Species_fullname
```
Here's an example query:
```sparql
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX dct: <http://purl.org/dc/terms/>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/>
PREFIX ncbiTaxon: <https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=>
PREFIX generif: <http://www.ncbi.nlm.nih.gov/gene?cmd=Retrieve&dopt=Graphics&list_uids=>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX genbank: <https://bioregistry.io/reference/genbank:>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
SELECT * WHERE {
?s gnt:hasSequence "GAAAAGGACGAGAGAAAATTATTTTTAAGATAATTAAACATAAAAACCCTGGTGCTTATTACATTATAAAGTACGTTTTTAAAAACCCACAAACTATTATACATACGTTTATGAATCAATTAAATACTCTGCACTTGTTAGGAACACGCATATCCCTTCTTTGTTGAGTTTAACGGAACGGGACAGCGGCGTGCGCCCGCGGCTGGGCTGCTCTGGCCGCGGGTCTCCCCAGGCG" .
?s xkos:classifiedUnder gn:Mus_musculus .
?s ?p ?o .
}
```
Expected Result:
```rdf
genbank:AA002843 gnt:hasSequence "GAAAAGGACGAGAGAAAATTATTTTTAAGATAATTAAACATAAAAACCCTGGTGCTTATTACATTATAAAGTACGTTTTTAAAAACCCACAAACTATTATACATACGTTTATGAATCAATTAAATACTCTGCACTTGTTAGGAACACGCATATCCCTTCTTTGTTGAGTTTAACGGAACGGGACAGCGGCGTGCGCCCGCGGCTGGGCTGCTCTGGCCGCGGGTCTCCCCAGGCG" .
genbank:AA002843 xkos:classifiedUnder gn:Mus_musculus .
```
|
