1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
|
# Info files / Investigators Metadata
## 'info-files'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT InfoFiles.InfoPageName, IF(GenoFreeze.Id IS NOT NULL, 'gnc:Genotype', IF(PublishFreeze.Id IS NOT NULL, 'gnc:Phenotype', IF(ProbeSetFreeze.Name IS NOT NULL, 'gnc:Probeset', ''))) AS DatasetType, InfoFiles.InfoPageName, IFNULL(GenoFreeze.FullName, IFNULL(PublishFreeze.FullName, '')) AS DatasetFullName, Datasets.DatasetName AS DatasetGroup, Datasets.PublicationTitle, InfoFiles.InfoFileTitle, IFNULL(GenoFreeze.CreateTime, IFNULL(PublishFreeze.CreateTime, IFNULL(ProbeSetFreeze.CreateTime, ''))) AS createTimeGenoFreeze, Investigators.FirstName, Investigators.LastName, Investigators.Email, Organizations.OrganizationName, InfoFiles.GN_AccesionId, DatasetStatus.DatasetStatusName, IFNULL(InbredSet.Name, IFNULL(PublishInbredSet.Name, GenoInbredSet.Name)) AS InbredSetName, Tissue.Short_Name, AvgMethod.Name AS AvgMethodName, AvgMethod.Name AS AvgMethodName, GeneChip.Name AS GeneChip, IFNULL(Datasets.GeoSeries, '') AS GeoSeries FROM InfoFiles LEFT JOIN PublishFreeze ON InfoFiles.InfoPageName = PublishFreeze.Name LEFT JOIN GenoFreeze ON InfoFiles.InfoPageName = GenoFreeze.Name LEFT JOIN ProbeSetFreeze ON InfoFiles.InfoPageName = ProbeSetFreeze.Name LEFT JOIN InbredSet ON InfoFiles.InbredSetId = InbredSet.InbredSetId LEFT JOIN Species ON InfoFiles.SpeciesId = Species.SpeciesId LEFT JOIN Datasets USING (DatasetId) LEFT JOIN DatasetStatus USING (DatasetStatusId) LEFT JOIN Tissue USING (TissueId) LEFT JOIN Investigators USING (InvestigatorId) LEFT JOIN AvgMethod USING (AvgMethodId) LEFT JOIN Organizations USING (OrganizationId) LEFT JOIN GeneChip USING (GeneChipId) LEFT JOIN InbredSet PublishInbredSet ON PublishFreeze.InbredSetId = PublishInbredSet.InbredSetId LEFT JOIN InbredSet GenoInbredSet ON GenoFreeze.InbredSetId = GenoInbredSet.InbredSetId WHERE GN_AccesionId IS NOT NULL
```
The above query results to triples that have the form:
```text
gn:Infofiles_infopagename_ -> rdf:type -> dcat:Dataset
gn:Infofiles_infopagename_ -> xkos:classifiedUnder -> DatasetType
gn:Infofiles_infopagename_ -> rdfs:label -> InfoFiles(InfoPageName)
gn:Infofiles_infopagename_ -> skos:prefLabel -> DatasetFullName
gn:Infofiles_infopagename_ -> skos:altLabel -> Datasets(DatasetGroup)
gn:Infofiles_infopagename_ -> dct:title -> Datasets(PublicationTitle)
gn:Infofiles_infopagename_ -> dct:created -> createTimeGenoFreeze
gn:Infofiles_infopagename_ -> dcat:contactPoint -> gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email
gn:Infofiles_infopagename_ -> foaf:Organization -> Organizations(OrganizationName)
gn:Infofiles_infopagename_ -> dct:identifier -> GNInfoFiles(GN_AccesionId)
gn:Infofiles_infopagename_ -> dct:accessRights -> datasetstatus(datasetstatusname)
gn:Infofiles_infopagename_ -> gnt:belongsToGroup -> gn:setInbredsetname
gn:Infofiles_infopagename_ -> gnt:hasTissue -> gn:tissueTissue_short_name
gn:Infofiles_infopagename_ -> gnt:usesNormalization -> gn:avgMethodAvgmethod_avgmethodname
gn:Infofiles_infopagename_ -> gnt:hasSummary -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/summary.rtf>
gn:Infofiles_infopagename_ -> gnt:hasTissueInfo -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/tissue.rtf>
gn:Infofiles_infopagename_ -> gnt:hasCitation -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/citation.rtf>
gn:Infofiles_infopagename_ -> gnt:hasSpecifics -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/specifics.rtf>
gn:Infofiles_infopagename_ -> gnt:hasCaseInfo -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/cases.rtf>
gn:Infofiles_infopagename_ -> gnt:hasPlatformInfo -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/platform.rtf>
gn:Infofiles_infopagename_ -> gnt:hasDataProcessingInfo -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/processing.rtf>
gn:Infofiles_infopagename_ -> gnt:hasNotes -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/notes.rtf>
gn:Infofiles_infopagename_ -> gnt:hasExperimentType -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/experiment-type.rtf>
gn:Infofiles_infopagename_ -> gnt:hasExperimentDesign -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/experiment-design.rtf>
gn:Infofiles_infopagename_ -> gnt:hasContributors -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/contributors.rtf>
gn:Infofiles_infopagename_ -> gnt:hasAcknowledgement -> <https://git.genenetwork.org/gn-docs/tree/general/datasets/Infofiles_infopagename_/acknowledgment.rtf>
gn:Infofiles_infopagename_ -> gnt:usesPlatform -> gn:platformGenechip_genechip
gn:Infofiles_infopagename_ -> gnt:hasGeoSeriesId ->
```
Here's an example query:
```sparql
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX dct: <http://purl.org/dc/terms/>
SELECT * WHERE {
?s rdf:type dcat:Dataset .
?s xkos:classifiedUnder gnc:Phenotype .
?s rdfs:label "GITrMetPublish" .
?s skos:prefLabel "GI Tract Metagenome Phenotypes" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:Gitrmetpublish rdf:type dcat:Dataset .
gn:Gitrmetpublish xkos:classifiedUnder gnc:Phenotype .
gn:Gitrmetpublish rdfs:label "GITrMetPublish" .
gn:Gitrmetpublish skos:prefLabel "GI Tract Metagenome Phenotypes" .
gn:Gitrmetpublish skos:altLabel "GI Tract Metagenome Phenotypes" .
gn:Gitrmetpublish dct:title "GI Tract Metagenome Phenotypes" .
gn:Gitrmetpublish dct:created "2016-10-27" .
gn:Gitrmetpublish dcat:contactPoint gn:investigatorByron_jones_bjone129_uthsc.edu .
gn:Gitrmetpublish foaf:Organization "University of Tennessee Health Science Center" .
gn:Gitrmetpublish dct:identifier "GN658" .
gn:Gitrmetpublish dct:accessRights "private" .
gn:Gitrmetpublish gnt:belongsToGroup gn:setBxd .
gn:Gitrmetpublish gnt:hasTissue gn:tissueGut .
gn:Gitrmetpublish gnt:usesNormalization gn:avgMethodRma .
gn:Gitrmetpublish gnt:usesPlatform gn:platformMogene-1_0-st-v1 .
```
## 'publishfreeze'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT PublishFreeze.Name, PublishFreeze.FullName, PublishFreeze.Name, PublishFreeze.ShortName, PublishFreeze.CreateTime, InbredSet.Name AS InbredSetName FROM PublishFreeze LEFT JOIN InfoFiles ON InfoFiles.InfoPageName = PublishFreeze.Name LEFT JOIN InbredSet ON PublishFreeze.InbredSetId = InbredSet.InbredSetId WHERE PublishFreeze.public > 0 AND PublishFreeze.confidentiality < 1 AND InfoFiles.InfoFileId IS NULL
```
The above query results to triples that have the form:
```text
gn:Publishfreeze_name_ -> rdf:type -> dcat:Dataset
gn:Publishfreeze_name_ -> xkos:classifiedUnder -> gnc:Phenotype
gn:Publishfreeze_name_ -> dct:title -> PublishFreeze(FullName)
gn:Publishfreeze_name_ -> rdfs:label -> PublishFreeze(Name)
gn:Publishfreeze_name_ -> skos:altLabel -> PublishFreeze(ShortName)
gn:Publishfreeze_name_ -> dct:created -> "PublishFreeze(CreateTime)"^^xsd:date
gn:Publishfreeze_name_ -> gnt:belongsToGroup -> gn:setInbredset_inbredsetname
```
Here's an example query:
```sparql
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX dct: <http://purl.org/dc/terms/>
SELECT * WHERE {
?s rdf:type dcat:Dataset .
?s xkos:classifiedUnder gnc:Phenotype .
?s dct:title "B6D2F2 PSU Phenotypes" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:B6d2f2_psupublish rdf:type dcat:Dataset .
gn:B6d2f2_psupublish xkos:classifiedUnder gnc:Phenotype .
gn:B6d2f2_psupublish dct:title "B6D2F2 PSU Phenotypes" .
gn:B6d2f2_psupublish rdfs:label "B6D2F2-PSUPublish" .
gn:B6d2f2_psupublish skos:altLabel "B6D2F2 PSU Publish" .
gn:B6d2f2_psupublish dct:created "2015-03-18"^^xsd:date .
gn:B6d2f2_psupublish gnt:belongsToGroup gn:setB6d2f2-psu .
```
## 'genofreeze'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT GenoFreeze.Name, GenoFreeze.Name, GenoFreeze.FullName, GenoFreeze.ShortName, GenoFreeze.CreateTime, InbredSet.Name AS InbredSetName FROM GenoFreeze LEFT JOIN InfoFiles ON InfoFiles.InfoPageName = GenoFreeze.Name LEFT JOIN InbredSet ON GenoFreeze.InbredSetId = InbredSet.InbredSetId WHERE GenoFreeze.public > 0 AND GenoFreeze.confidentiality < 1 AND InfoFiles.InfoPageName IS NULL
```
The above query results to triples that have the form:
```text
gn:Genofreeze_name_ -> rdf:type -> dcat:Dataset
gn:Genofreeze_name_ -> xkos:classifiedUnder -> gnc:Genotype
gn:Genofreeze_name_ -> rdfs:label -> GenoFreeze(Name)
gn:Genofreeze_name_ -> dct:title -> GenoFreeze(FullName)
gn:Genofreeze_name_ -> skos:altLabel -> GenoFreeze(ShortName)
gn:Genofreeze_name_ -> dct:created -> "GenoFreeze(CreateTime)"^^xsd:date
gn:Genofreeze_name_ -> gnt:belongsToGroup -> gn:setInbredset_inbredsetname
```
Here's an example query:
```sparql
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX dct: <http://purl.org/dc/terms/>
SELECT * WHERE {
?s rdf:type dcat:Dataset .
?s xkos:classifiedUnder gnc:Genotype .
?s rdfs:label "B6D2RIGeno" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:B6d2rigeno rdf:type dcat:Dataset .
gn:B6d2rigeno xkos:classifiedUnder gnc:Genotype .
gn:B6d2rigeno rdfs:label "B6D2RIGeno" .
gn:B6d2rigeno dct:title "B6D2RI Genotypes" .
gn:B6d2rigeno skos:altLabel "B6D2RIGeno" .
gn:B6d2rigeno dct:created "2022-10-24"^^xsd:date .
gn:B6d2rigeno gnt:belongsToGroup gn:setB6d2ri .
```
## 'probesetfreeze'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT ProbeSetFreeze.Name, AvgMethod.Name AS AvgMethodName, AvgMethod.Name AS AvgMethodName, ProbeSetFreeze.FullName, ProbeSetFreeze.ShortName, ProbeSetFreeze.Name, ProbeSetFreeze.Name2, ProbeSetFreeze.CreateTime, ProbeSetFreeze.DataScale, Tissue.Short_Name, InbredSet.Name AS InbredSetName FROM ProbeSetFreeze LEFT JOIN InfoFiles ON InfoFiles.InfoPageName = ProbeSetFreeze.Name LEFT JOIN ProbeFreeze USING (ProbeFreezeId) LEFT JOIN AvgMethod ON AvgMethod.AvgMethodId = ProbeSetFreeze.AvgID LEFT JOIN InbredSet ON ProbeFreeze.InbredSetId = InbredSet.Id LEFT JOIN Tissue ON ProbeFreeze.TissueId = Tissue.TissueId WHERE ProbeSetFreeze.public > 0 AND InfoFiles.InfoPageName IS NULL GROUP BY ProbeFreeze.Id
```
The above query results to triples that have the form:
```text
gn:Probesetfreeze_name_ -> rdf:type -> dcat:Dataset
gn:Probesetfreeze_name_ -> xkos:classifiedUnder -> gnc:Probeset
gn:Probesetfreeze_name_ -> gnt:usesNormalization -> gn:avgMethodAvgmethod_avgmethodname
gn:Probesetfreeze_name_ -> dct:title -> ProbeSetFreeze(FullName)
gn:Probesetfreeze_name_ -> rdfs:label -> ProbeSetFreeze(ShortName)
gn:Probesetfreeze_name_ -> skos:prefLabel -> ProbeSetFreeze(Name)
gn:Probesetfreeze_name_ -> skos:altLabel -> ProbeSetFreeze(Name2)
gn:Probesetfreeze_name_ -> dct:created -> "ProbeSetFreeze(CreateTime)"^^xsd:datetime
gn:Probesetfreeze_name_ -> gnt:usesDataScale -> ProbeSetFreeze(DataScale)
gn:Probesetfreeze_name_ -> gnt:hasTissue -> gn:tissueTissue_short_name
gn:Probesetfreeze_name_ -> gnt:belongsToGroup -> gn:setInbredset_inbredsetname
```
Here's an example query:
```sparql
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX dct: <http://purl.org/dc/terms/>
SELECT * WHERE {
?s rdf:type dcat:Dataset .
?s xkos:classifiedUnder gnc:Probeset .
?s gnt:usesNormalization gn:avgMethodRankinv .
?s dct:title "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:Cmmtubcbxdp00cerilm0513 rdf:type dcat:Dataset .
gn:Cmmtubcbxdp00cerilm0513 xkos:classifiedUnder gnc:Probeset .
gn:Cmmtubcbxdp00cerilm0513 gnt:usesNormalization gn:avgMethodRankinv .
gn:Cmmtubcbxdp00cerilm0513 dct:title "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" .
gn:Cmmtubcbxdp00cerilm0513 rdfs:label "UBC/CMMT BXD P0 Cerebellum ILM Mouse WG-6 v2.0 (May13) RankInv" .
gn:Cmmtubcbxdp00cerilm0513 skos:prefLabel "CMMTUBCBXDP00CerILM0513" .
gn:Cmmtubcbxdp00cerilm0513 skos:altLabel "CMMTUBCBXDP00CerILMMay13" .
gn:Cmmtubcbxdp00cerilm0513 dct:created "2013-04-22"^^xsd:datetime .
gn:Cmmtubcbxdp00cerilm0513 gnt:usesDataScale "log2" .
gn:Cmmtubcbxdp00cerilm0513 gnt:hasTissue gn:tissueCb .
gn:Cmmtubcbxdp00cerilm0513 gnt:belongsToGroup gn:setBxd .
```
## 'investigators'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT Investigators.FirstName, Investigators.LastName, Investigators.Email, Investigators.FirstName, Investigators.LastName, Investigators.FirstName, Investigators.LastName, Investigators.Url, Investigators.Address, Investigators.City, Investigators.State, Investigators.ZipCode, Investigators.Country FROM Investigators GROUP BY Email
```
The above query results to triples that have the form:
```text
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> rdf:type -> foaf:Person
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> foaf:name -> Investigators(FirstName) Investigators(LastName)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> foaf:givenName -> Investigators(FirstName)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> foaf:familyName -> Investigators(LastName)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> foaf:homepage -> Investigators(Url)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> v:adr -> Investigators(Address)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> v:locality -> Investigators(City)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> v:region -> Investigators(State)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> v:postal-code -> Investigators(ZipCode)
gn:investigatorInvestigators_firstname_investigators_lastname_investigators_email -> v:country-name -> Investigators(Country)
```
Here's an example query:
```sparql
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX dct: <http://purl.org/dc/terms/>
SELECT * WHERE {
?s rdf:type foaf:Person .
?s foaf:name "Evan Williams" .
?s foaf:givenName "Evan" .
?s foaf:familyName "Williams" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:investigatorEvan_williams_ rdf:type foaf:Person .
gn:investigatorEvan_williams_ foaf:name "Evan Williams" .
gn:investigatorEvan_williams_ foaf:givenName "Evan" .
gn:investigatorEvan_williams_ foaf:familyName "Williams" .
gn:investigatorEvan_williams_ v:country-name "Switzerland" .
```
## 'gene-chip'
## Generated Triples:
The following SQL query was executed:
```sql
SELECT GeneChip.Name, GeneChip.GeneChipName, GeneChip.Name, IF(GeneChip.GeneChipName != GeneChip.Title, Title, NULL) AS Title, GeneChip.Go_tree_value, Species.Fullname, GeneChip.GeoPlatform FROM GeneChip LEFT JOIN Species USING (SpeciesId)
```
The above query results to triples that have the form:
```text
gn:platformGenechip_name -> rdf:type -> gnc:geneChip
gn:platformGenechip_name -> rdfs:label -> GeneChip(GeneChipName)
gn:platformGenechip_name -> skos:prefLabel -> GeneChip(Name)
gn:platformGenechip_name -> skos:altLabel -> Title
gn:platformGenechip_name -> gnt:hasGOTreeValue -> GeneChip(Go_tree_value)
gn:platformGenechip_name -> xkos:classifiedUnder -> gn:Species_fullname
gn:platformGenechip_name -> gnt:hasGeoSeriesId -> geoSeries:GeneChip(GeoPlatform)
```
Here's an example query:
```sparql
PREFIX v: <http://www.w3.org/2006/vcard/ns#>
PREFIX foaf: <http://xmlns.com/foaf/0.1/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX dcat: <http://www.w3.org/ns/dcat#>
PREFIX skos: <http://www.w3.org/2004/02/skos/core#>
PREFIX xkos: <http://rdf-vocabulary.ddialliance.org/xkos#>
PREFIX geoSeries: <http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=>
PREFIX gnt: <http://genenetwork.org/term/>
PREFIX gn: <http://genenetwork.org/id/>
PREFIX gnc: <http://genenetwork.org/category/>
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
PREFIX owl: <http://www.w3.org/2002/07/owl#>
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
PREFIX dct: <http://purl.org/dc/terms/>
SELECT * WHERE {
?s rdf:type gnc:geneChip .
?s rdfs:label "Affy Mouse Genome U74Av2 (GPL81)" .
?s skos:prefLabel "MG_U74AV2" .
?s ?p ?o .
}
```
Expected Result:
```rdf
gn:platformMg_u74av2 rdf:type gnc:geneChip .
gn:platformMg_u74av2 rdfs:label "Affy Mouse Genome U74Av2 (GPL81)" .
gn:platformMg_u74av2 skos:prefLabel "MG_U74AV2" .
gn:platformMg_u74av2 gnt:hasGOTreeValue "affy_mg_u74av2" .
gn:platformMg_u74av2 xkos:classifiedUnder gn:Mus_musculus .
gn:platformMg_u74av2 gnt:hasGeoSeriesId geoSeries:GPL81 .
```
|
