aboutsummaryrefslogtreecommitdiff
path: root/general/datasets/HQFNeoc_1210_RankInv/platform.rtf
blob: f0c52105f498d0396a5b34fc458e911f7f9d39a6 (plain)
1
2
3
4
5
6
7
<p><strong>Illumina Sentrix Mouse-6.1 BeadArray Platform (ILM6v1.1): </strong>The <a class="fs14" href="http://www.illumina.com" target="_blank">Mouse6.1</a> array consists of 46,643 unique probe sequences, each 50 nucleotides in length, that have been arrayed on glass slides using a novel bead technology.</p>

<p>Dunning M, Smith M, Thorne N, Tavare S (2006) beadarray: An R package to analyse Illumina BeadArrays. R News (the Newsletter of the P Project) 6:17-23. (see pages 17-23 of http://CRAN.R-project.org/doc/Rnews/Rnews_2006-5.pdf).</p>

<p>ANNOTATION: In summer of 2008, Xusheng Wang and Robert W. Williams reannotated the Illumina Mouse-6.1 array content. This new annotation is now incorporated into GeneNetwork. For 46643 probes on the Mouse 6.1 array platform (including control probes) we have identified XXXXX NCBI Entrez Gene IDs; XXXXX matched human Gene IDs; XXXXX matched rat Gene IDs; XXXXX NCBI HomoloGene IDs; and XXXXX OMIM IDs.</p>

<p>Position data for the 50-mer Illumina Mouse-6 array were initially downloaded from Sanger at http://www.sanger.ac.uk/Users/avc/Illumina/Mouse-6_V1.gff.gz but we then updated all positions by BLAT analysis from mm6 positions to mm8 positions (Hongqiang Li).</p>