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diff --git a/rdf-documentation/dump-publication.md b/rdf-documentation/dump-publication.md new file mode 100644 index 0000000..248be48 --- /dev/null +++ b/rdf-documentation/dump-publication.md @@ -0,0 +1,60 @@ +# Publications Metadata +## 'dump-publication' + +## Schema Triples: + +```text +gn:pubMedId -> rdfs:range -> rdfs:Literal +gn:title -> rdfs:range -> rdfs:Literal +gn:journal -> rdfs:range -> rdfs:Literal +gn:volume -> rdfs:range -> rdfs:Literal +gn:pages -> rdfs:range -> rdfs:Literal +gn:month -> rdfs:range -> rdfs:Literal +gn:year -> rdfs:range -> rdfs:Literal +gn:author -> rdfs:range -> rdfs:Literal +gn:abstract -> rdfs:range -> rdfs:Literal +``` +## Generated Triples: + +The following SQL query was executed: + +```sql +SELECT IF(Publication.PubMed_ID IS NULL, '', CONVERT(Publication.PubMed_Id, INT)) AS pmid, Publication.Id, IFNULL(PubMed_ID, '') AS pubmedId, Publication.Title, Publication.Journal, Publication.Volume, Publication.Pages, Publication.Month, Publication.Year, Publication.Authors, CAST(CONVERT(BINARY CONVERT(Publication.Abstract USING latin1) USING utf8) AS VARCHAR(100)) AS Abstract FROM Publication +``` + +The above query results to triples that have the form: + +```text +publication:pmid -> rdf:type -> gn:publication +publication:pmid -> gn:pubMedId -> pubmed:pubmedId +publication:pmid -> gn:title -> Publication(Title) +publication:pmid -> gn:journal -> Publication(Journal) +publication:pmid -> gn:volume -> Publication(Volume) +publication:pmid -> gn:pages -> Publication(Pages) +publication:pmid -> gn:month -> Publication(Month) +publication:pmid -> gn:year -> Publication(Year) +publication:pmid -> gn:abstract -> Abstract +publication:pmid -> gn:author -> PublicationAuthors +``` +Here's an example query: + +```sparql +PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> +PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> +PREFIX gn: <http://genenetwork.org/terms/> +PREFIX publication: <http://genenetwork.org/publication/> +PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> + +SELECT ?s ?p ?o WHERE { + ?s rdf:type gn:publication . + ?s ?p ?o . +} +``` + +Expected Result: + +```rdf +gn:unpublished_1 rdf:type gn:publication . +gn:unpublished_1 gn:year "0" . +``` + |