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Diffstat (limited to 'general/datasets/UTHSC_ILM_BXD_hipp_NOSb_0217/notes.rtf')
| -rw-r--r-- | general/datasets/UTHSC_ILM_BXD_hipp_NOSb_0217/notes.rtf | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/general/datasets/UTHSC_ILM_BXD_hipp_NOSb_0217/notes.rtf b/general/datasets/UTHSC_ILM_BXD_hipp_NOSb_0217/notes.rtf new file mode 100644 index 0000000..35247b6 --- /dev/null +++ b/general/datasets/UTHSC_ILM_BXD_hipp_NOSb_0217/notes.rtf @@ -0,0 +1,23 @@ +<p>Hippocampus 5 Conditions<br />
+Illumina Rank Invariant Normalized; Log2 Transformed and Z-Scored<br />
+Batch and Outlier Analysis on Partek Genomic Suite 6.6<br />
+ANOVA Done with batch (BATCH 1 AND 2); Batch effect removed<br />
+K MOZHUI (KMOZHUI@UTHSC.EDU) 12-Nov-12<br />
+Outliers removed are: 4060001003_A, 4060001010_D, 4060001012_A, 4060001012_C, 4060001012_E, AND 4060001078_A<br />
+Number of samples = 284<br />
+Number of probes = 46643</p>
+
+<ol>
+ <li>UTHSC Hippocampus Illumina v6.1 <strong>5Trt</strong> (Nov12) RankInv LRS=(46 999)-> <strong>1331</strong><br />
+ ProbeSetID:ILM3440048 Gene:Cdkl2 Max LRS=<strong>192</strong></li>
+ <li>UTHSC Hippocampus Illumina v6.1 <strong>NON</strong> (Nov12) RankInv LRS=(46 999)-> <strong>219</strong><br />
+ ProbeSetID:ILM6350725 Gene:C14orf119 Max LRS=<strong>97.8</strong></li>
+ <li>UTHSC Hippocampus Illumina v6.1 <strong>NOS</strong> (Nov12) RankInv LRS=(46 999)-> <strong>404</strong><br />
+ ProbeSetID:ILM3440048 Gene:Cdkl2 Max LRS=<strong>106.6</strong></li>
+ <li>UTHSC Hippocampus Illumina v6.1 <strong>NOE</strong> (Nov12) RankInv LRS=(46 999)-> <strong>509</strong><br />
+ ProbeSetID:ILM5270066 Gene:MGC67181 Max LRS=<strong>151</strong></li>
+ <li>UTHSC Hippocampus Illumina v6.1 <strong>RSS</strong> (Nov12) RankInv LRS=(46 999)-> <strong>415</strong><br />
+ ProbeSetID:ILM5720687 Gene:Abhd16a Max LRS=<strong>121.7</strong></li>
+ <li>UTHSC Hippocampus Illumina v6.1 <strong>RSE</strong> (Nov12) RankInv LRS=(46 999)-> <strong>421</strong><br />
+ ProbeSetID:ILM6350725 Gene:C14orf119 Max LRS=<strong>144.1</strong></li>
+</ol>
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