diff options
Diffstat (limited to 'general/datasets/UTHSC_BXD_WB_RNASeq1112/notes.rtf')
| -rw-r--r-- | general/datasets/UTHSC_BXD_WB_RNASeq1112/notes.rtf | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/general/datasets/UTHSC_BXD_WB_RNASeq1112/notes.rtf b/general/datasets/UTHSC_BXD_WB_RNASeq1112/notes.rtf new file mode 100644 index 0000000..c16bd50 --- /dev/null +++ b/general/datasets/UTHSC_BXD_WB_RNASeq1112/notes.rtf @@ -0,0 +1,23 @@ +<p>RNA sequencing for BXD strains on SOLiD by David Li.<br />
+All Bam files alignment done by Xusheng Wang<br />
+Aligned files were uploaded to Partek Genomic Suite 6.5 (version 6.10.0810) and processed by K Mozhui<br />
+Normalization: RPKM (reads per kilobase per million mapped reads)<br />
+Batch effect due to low exonic reads for batch 2</p>
+
+<p>Revision 1.6 Untrimmed (current) LRS=(23 999) -><strong>350</strong> records<br />
+Max LRS = <strong>102.6</strong> Record Id:uthsc_nr_015498, Gene Symbol:1500004A13Rik **Note: 1 sample BXD45 and BXD34 removed. BXD41 switched to BXD1 as a second posible candidate.</p>
+
+<p>Revision 1.5 Untrimmed LRS=(23 999) -><strong>268</strong> records<br />
+Max LRS = <strong>80.0</strong> Record Id:uthsc_nm_001039533, Gene Symbol:Pdxdc1 **Note: 1 sample BXD45 removed. BXD41 switched to BXD1 as a second posible candidate.</p>
+
+<p>Revision 1.4 Untrimmed LRS=(23 999) -><strong>246</strong> records<br />
+Max LRS = <strong>80.0</strong> Record Id:uthsc_nm_001039533, Gene Symbol:Pdxdc1 **Note: 1 sample BXD45 removed and keep BXD41</p>
+
+<p>Revision 1.3 Untrimmed LRS=(23 999) -><strong>233</strong> records<br />
+Max LRS = <strong>80.7</strong> Record Id:uthsc_nm_001039533, Gene Symbol:Pdxdc1</p>
+
+<p>Revision 1.2 Untrimmed LRS=(23 999) -><strong>190</strong> records<br />
+Max LRS = <strong>56.9</strong> Record Id:uthsc_nr_003513, Gene Symbol:Neat1</p>
+
+<p>Revision 1 Untrimmed LRS=(23 999) -><strong>126</strong> records<br />
+Max LRS = <strong>35.3</strong> Record Id:uthsc_nm_001113412, Gene Symbol:Fggy</p>
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