diff options
Diffstat (limited to 'general/datasets/Lsru_cc_st_1219')
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/acknowledgment.rtf | 1 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/cases.rtf | 5 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/citation.rtf | 1 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/contributors.rtf | 5 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/experiment-design.rtf | 3 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/platform.rtf | 1 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/processing.rtf | 1 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/specifics.rtf | 1 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/summary.rtf | 13 | ||||
| -rw-r--r-- | general/datasets/Lsru_cc_st_1219/tissue.rtf | 1 |
10 files changed, 32 insertions, 0 deletions
diff --git a/general/datasets/Lsru_cc_st_1219/acknowledgment.rtf b/general/datasets/Lsru_cc_st_1219/acknowledgment.rtf new file mode 100644 index 0000000..3b345f3 --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/acknowledgment.rtf @@ -0,0 +1 @@ +<p>LS and MB would like to thank the Luxembourg National Research Fund (FNR) for the support (FNR CORE C15/BM/10406131 grant).</p>
diff --git a/general/datasets/Lsru_cc_st_1219/cases.rtf b/general/datasets/Lsru_cc_st_1219/cases.rtf new file mode 100644 index 0000000..f519f24 --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/cases.rtf @@ -0,0 +1,5 @@ +<p>CC mice were bred by Dr. Klaus Schughart at the HZI, Braunschweig, Germany.</p>
+
+<p>Note: Only one of 8 - 10 male samples was processed for RNA-seq (unilateral dissection of VMB). Luxembourg team also has 8 - 10 female samples. 16 to 20 complete brain hemispheres fixed in paraformaldehyde for 48 hours and then transferred to PBS with sodium azide (now stored at 4 degree Celsius at BT1, 7 ave des Hauts-Fourneaux, L-4362 Esch-sur-Alzette).</p>
+
+<p>C57BL/6J, A/J, and DBA/2J were bred by University of Luxembourg.</p>
diff --git a/general/datasets/Lsru_cc_st_1219/citation.rtf b/general/datasets/Lsru_cc_st_1219/citation.rtf new file mode 100644 index 0000000..94560c7 --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/citation.rtf @@ -0,0 +1 @@ +<p>None as of December 2019</p>
diff --git a/general/datasets/Lsru_cc_st_1219/contributors.rtf b/general/datasets/Lsru_cc_st_1219/contributors.rtf new file mode 100644 index 0000000..c0e81ee --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/contributors.rtf @@ -0,0 +1,5 @@ +<p>manuel.buttini@uni.lu</p>
+
+<p>lasse.sinkkonen@uni.lu</p>
+
+<p>yujuan.gui@uni.lu</p>
diff --git a/general/datasets/Lsru_cc_st_1219/experiment-design.rtf b/general/datasets/Lsru_cc_st_1219/experiment-design.rtf new file mode 100644 index 0000000..e2c242d --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/experiment-design.rtf @@ -0,0 +1,3 @@ +<p>Single-end 75bp reads at a depth of about 30 million reads/sample. Processed by Yujuan Gui using both RPKM and TPM. Log2 of TPM+1 uploaded into GeneNetwork Dec 2019 by Arthur Centeno and Robert W. Williams.</p>
+
+<p>Half of the C57BL/6J and A/J were sequenced in Genomics Core Facility - EMBL Heidelberg with single-end 80bp reads at a depth of about 30 million reads/sample.</p>
diff --git a/general/datasets/Lsru_cc_st_1219/platform.rtf b/general/datasets/Lsru_cc_st_1219/platform.rtf new file mode 100644 index 0000000..a9c7084 --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/platform.rtf @@ -0,0 +1 @@ +<p>Illumina NextSeq 5000</p>
diff --git a/general/datasets/Lsru_cc_st_1219/processing.rtf b/general/datasets/Lsru_cc_st_1219/processing.rtf new file mode 100644 index 0000000..3a35b8f --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/processing.rtf @@ -0,0 +1 @@ +<p>Sequencing data processed by Yujuan Gui. Sequencing data were TPM transformed then log2.</p>
diff --git a/general/datasets/Lsru_cc_st_1219/specifics.rtf b/general/datasets/Lsru_cc_st_1219/specifics.rtf new file mode 100644 index 0000000..4609fdf --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/specifics.rtf @@ -0,0 +1 @@ +CC
\ No newline at end of file diff --git a/general/datasets/Lsru_cc_st_1219/summary.rtf b/general/datasets/Lsru_cc_st_1219/summary.rtf new file mode 100644 index 0000000..aaf3176 --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/summary.rtf @@ -0,0 +1,13 @@ +<p>RNA-seq on ventral midbrains, all animals ~ 3-month old.</p>
+
+<p>Collaborative Cross: 1 male per strain for 32 CC strains.</p>
+
+<p>C57BL/6J, A/J, and DBA/2J: The value is the mean of 12 samples (6 males + 6 females).</p>
+
+<p>Team of Investigators:</p>
+
+<p>Lasse Sinkkkonen, Manuel Buttini, Yujuan Gui, and Melanie Thomas at the University of Luxembourg</p>
+
+<p>Data entered into GeneNetwork December 2019 by Arthur Centeno, Robert W. Williams, Yujuan Gui</p>
+
+<p> </p>
diff --git a/general/datasets/Lsru_cc_st_1219/tissue.rtf b/general/datasets/Lsru_cc_st_1219/tissue.rtf new file mode 100644 index 0000000..e8f4aff --- /dev/null +++ b/general/datasets/Lsru_cc_st_1219/tissue.rtf @@ -0,0 +1 @@ +<p>Ventral midbrains</p>
|