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Diffstat (limited to 'api')
-rw-r--r-- | api/questions-to-ask-GN.md | 122 |
1 files changed, 121 insertions, 1 deletions
diff --git a/api/questions-to-ask-GN.md b/api/questions-to-ask-GN.md index 4f5f553..b2a7140 100644 --- a/api/questions-to-ask-GN.md +++ b/api/questions-to-ask-GN.md @@ -391,9 +391,129 @@ curl -s "https://genenetwork.org/api3/api/search/?query=diabetes&per_page=2&type ] ``` +And limit search to rat + +``` +curl -s "https://genenetwork.org/api3/api/search/?query=diabetes%20species:rat&per_page=2&type=phenotype" +[ + { + "additive": 29122.0720720721, + "authors": [ + "Aitman TJ", + "Gotoda T", + "Evans AL", + "Imrie H", + "Heath KE", + "Trembling PM", + "Truman H", + "Wallace CA", + "Rahman A", + "Dore C", + "Flint J", + "Kren V", + "Zidek V", + "Kurtz TW", + "Pravenec M", + "Scott J" + ], + "dataset": "HXBBXHPublish", + "dataset_fullname": "HXB/BXH Published Phenotypes", + "description": "fat cell volume", + "geno_chr": "9", + "geno_mb": 113.254852, + "group": "HXBBXH", + "inbredsetcode": "HRP", + "lrs": 13.194881937804, + "mean": 161028.5185185185, + "name": "10077", + "pubmed_id": 9171835, + "pubmed_link": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9171835&dopt=Abstract", + "species": "rat", + "year": 1997 + }, + { + "additive": -1.76917307692308, + "authors": [ + "Aitman TJ", + "Gotoda T", + "Evans AL", + "Imrie H", + "Heath KE", + "Trembling PM", + "Truman H", + "Wallace CA", + "Rahman A", + "Dore C", + "Flint J", + "Kren V", + "Zidek V", + "Kurtz TW", + "Pravenec M", + "Scott J" + ], + "dataset": "HXBBXHPublish", + "dataset_fullname": "HXB/BXH Published Phenotypes", + "description": "maximal/basal glucose uptake", + "geno_chr": "8", + "geno_mb": 47.2059, + "group": "HXBBXH", + "inbredsetcode": "HRP", + "lrs": 15.974503211303, + "mean": 2.6577037087193243, + "name": "10078", + "pubmed_id": 9171835, + "pubmed_link": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9171835&dopt=Abstract", + "species": "rat", + "year": 1997 + } +] +``` + +For more search options see + +https://issues.genenetwork.org/topics/xapian-search-queries + ## What phenotypes do we have for a certain dataset? -TBD +``` +curl -s "https://genenetwork.org/api3/api/search/?query=ucla+bdf2&per_page=2&type=phenotype" + { + "additive": -1.78751654677337, + "authors": [ + "M. Mehrabian" + ], + "dataset": "CTB6F2Publish", + "dataset_fullname": "CastB6/B6Cast F2 UCLA Published Phenotypes", + "description": "Bodyweight", + "geno_chr": "X", + "geno_mb": 143.108849, + "group": "CTB6F2", + "lrs": 60.1557267730131, + "mean": 26.791255800147034, + "name": "10002", + "species": "mouse", + "year": 2004 + }, + { + "additive": -9.34532520325203, + "authors": [ + "M. Mehrabian" + ], + "dataset": "CTB6F2Publish", + "dataset_fullname": "CastB6/B6Cast F2 UCLA Published Phenotypes", + "description": "High Density Lipoprotein", + "geno_chr": "X", + "geno_mb": 143.108849, + "group": "CTB6F2", + "lrs": 51.9819452425847, + "mean": 78.04118993135012, + "name": "10001", + "species": "mouse", + "year": 2004 + } +``` + +This should work on actual dataset identifiers. # More |