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-rw-r--r--api/questions-to-ask-GN.md122
1 files changed, 121 insertions, 1 deletions
diff --git a/api/questions-to-ask-GN.md b/api/questions-to-ask-GN.md
index 4f5f553..b2a7140 100644
--- a/api/questions-to-ask-GN.md
+++ b/api/questions-to-ask-GN.md
@@ -391,9 +391,129 @@ curl -s "https://genenetwork.org/api3/api/search/?query=diabetes&per_page=2&type
]
```
+And limit search to rat
+
+```
+curl -s "https://genenetwork.org/api3/api/search/?query=diabetes%20species:rat&per_page=2&type=phenotype"
+[
+ {
+ "additive": 29122.0720720721,
+ "authors": [
+ "Aitman TJ",
+ "Gotoda T",
+ "Evans AL",
+ "Imrie H",
+ "Heath KE",
+ "Trembling PM",
+ "Truman H",
+ "Wallace CA",
+ "Rahman A",
+ "Dore C",
+ "Flint J",
+ "Kren V",
+ "Zidek V",
+ "Kurtz TW",
+ "Pravenec M",
+ "Scott J"
+ ],
+ "dataset": "HXBBXHPublish",
+ "dataset_fullname": "HXB/BXH Published Phenotypes",
+ "description": "fat cell volume",
+ "geno_chr": "9",
+ "geno_mb": 113.254852,
+ "group": "HXBBXH",
+ "inbredsetcode": "HRP",
+ "lrs": 13.194881937804,
+ "mean": 161028.5185185185,
+ "name": "10077",
+ "pubmed_id": 9171835,
+ "pubmed_link": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9171835&dopt=Abstract",
+ "species": "rat",
+ "year": 1997
+ },
+ {
+ "additive": -1.76917307692308,
+ "authors": [
+ "Aitman TJ",
+ "Gotoda T",
+ "Evans AL",
+ "Imrie H",
+ "Heath KE",
+ "Trembling PM",
+ "Truman H",
+ "Wallace CA",
+ "Rahman A",
+ "Dore C",
+ "Flint J",
+ "Kren V",
+ "Zidek V",
+ "Kurtz TW",
+ "Pravenec M",
+ "Scott J"
+ ],
+ "dataset": "HXBBXHPublish",
+ "dataset_fullname": "HXB/BXH Published Phenotypes",
+ "description": "maximal/basal glucose uptake",
+ "geno_chr": "8",
+ "geno_mb": 47.2059,
+ "group": "HXBBXH",
+ "inbredsetcode": "HRP",
+ "lrs": 15.974503211303,
+ "mean": 2.6577037087193243,
+ "name": "10078",
+ "pubmed_id": 9171835,
+ "pubmed_link": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9171835&dopt=Abstract",
+ "species": "rat",
+ "year": 1997
+ }
+]
+```
+
+For more search options see
+
+https://issues.genenetwork.org/topics/xapian-search-queries
+
## What phenotypes do we have for a certain dataset?
-TBD
+```
+curl -s "https://genenetwork.org/api3/api/search/?query=ucla+bdf2&per_page=2&type=phenotype"
+ {
+ "additive": -1.78751654677337,
+ "authors": [
+ "M. Mehrabian"
+ ],
+ "dataset": "CTB6F2Publish",
+ "dataset_fullname": "CastB6/B6Cast F2 UCLA Published Phenotypes",
+ "description": "Bodyweight",
+ "geno_chr": "X",
+ "geno_mb": 143.108849,
+ "group": "CTB6F2",
+ "lrs": 60.1557267730131,
+ "mean": 26.791255800147034,
+ "name": "10002",
+ "species": "mouse",
+ "year": 2004
+ },
+ {
+ "additive": -9.34532520325203,
+ "authors": [
+ "M. Mehrabian"
+ ],
+ "dataset": "CTB6F2Publish",
+ "dataset_fullname": "CastB6/B6Cast F2 UCLA Published Phenotypes",
+ "description": "High Density Lipoprotein",
+ "geno_chr": "X",
+ "geno_mb": 143.108849,
+ "group": "CTB6F2",
+ "lrs": 51.9819452425847,
+ "mean": 78.04118993135012,
+ "name": "10001",
+ "species": "mouse",
+ "year": 2004
+ }
+```
+
+This should work on actual dataset identifiers.
# More