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-rw-r--r--api/questions-to-ask-GN.md21
1 files changed, 13 insertions, 8 deletions
diff --git a/api/questions-to-ask-GN.md b/api/questions-to-ask-GN.md
index 0bc66d6..ba16793 100644
--- a/api/questions-to-ask-GN.md
+++ b/api/questions-to-ask-GN.md
@@ -515,6 +515,18 @@ curl -s "https://genenetwork.org/api3/api/search/?query=ucla+bdf2&per_page=2&typ
This should work on actual dataset identifiers.
+## How many phenotypes do we have for each species?
+
+Could we apply some filters to choose the phenotypes to use (is it easy to discard the mapping trait with specific LRS threshold)?
+
+## Are there genetic variants (SNPs, indels, etc.) linked to a particular trait?
+
+PheWAS or reversed genetics.
+It would be nice to insert a marker we are interested in and see the correlations with the traits, the result could be a graph or a table.
+
+## Which genes or genomic regions show conserved synteny across the species we are interested in?
+
+
# More
All computations in GN can be exposed through the API.
@@ -544,11 +556,4 @@ Finally the SPARQL endpoint which is driven by RDF generated with
Visit
* https://sparql.genenetwork.org/sparql
-*
-### How many phenotypes do we have for each species?
-Could we apply some filters to choose the phenotypes to use (is it easy to discard the mapping trait with specific LRS threshold)?
-
-### Are there genetic variants (SNPs, indels, etc.) linked to a particular trait?
-It would be nice to insert a marker we are interested in and see the correlations with the traits, the result could be a graph or a table.
-
-### Which genes or genomic regions show conserved synteny across the species we are interested in?
+*