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| author | Pjotr Prins | 2021-11-17 07:24:35 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2021-11-17 07:24:35 -0600 |
| commit | d16b07f612ff87791dc63f976e872301dc332fd0 (patch) | |
| tree | 9f175ec9ffc090f34384fd84e11e1cb7c884873b /story-boards/starting-from-known-gene | |
| parent | 11d55a97792c91ce4b961363db9d852ee6031262 (diff) | |
| download | gn-docs-d16b07f612ff87791dc63f976e872301dc332fd0.tar.gz | |
geewiki
Diffstat (limited to 'story-boards/starting-from-known-gene')
| -rwxr-xr-x | story-boards/starting-from-known-gene/generate.sh | 3 | ||||
| -rw-r--r-- | story-boards/starting-from-known-gene/genewiki.png | bin | 0 -> 148494 bytes | |||
| -rw-r--r-- | story-boards/starting-from-known-gene/starting-from-known-gene.md | 17 |
3 files changed, 15 insertions, 5 deletions
diff --git a/story-boards/starting-from-known-gene/generate.sh b/story-boards/starting-from-known-gene/generate.sh index d309ef8..c5d4d3d 100755 --- a/story-boards/starting-from-known-gene/generate.sh +++ b/story-boards/starting-from-known-gene/generate.sh @@ -1,5 +1,8 @@ #!/bin/bash +ruby ../../scripts/screenshot.rb --url "http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2" --out genewiki.png --extract 1200x500+0+0 + +exit 1 ruby ../../scripts/screenshot.rb --url "https://genenetwork.org/" --out genenetwork-home.png convert -extract 800x100+0+0 genenetwork-home.png global-search.png diff --git a/story-boards/starting-from-known-gene/genewiki.png b/story-boards/starting-from-known-gene/genewiki.png Binary files differnew file mode 100644 index 0000000..22d7580 --- /dev/null +++ b/story-boards/starting-from-known-gene/genewiki.png diff --git a/story-boards/starting-from-known-gene/starting-from-known-gene.md b/story-boards/starting-from-known-gene/starting-from-known-gene.md index 3eaaafd..2abd7a1 100644 --- a/story-boards/starting-from-known-gene/starting-from-known-gene.md +++ b/story-boards/starting-from-known-gene/starting-from-known-gene.md @@ -2,7 +2,7 @@ GeneNetwork contains data on thousands of experiments. How do you mine GN when you have the name of a gene? Start with [BRCA2](https://genenetwork.org/genes/BRCA2). -## Use the search page +# Use the search page The top bar of GeneNetwork shows a global search: @@ -12,7 +12,9 @@ We can look for the `Brca2` mouse gene, resulting in []() -## Find the right alias/name <a name="alias" /> +FIXME: @zsloan above image should show a table of results too, see https://github.com/genenetwork/genenetwork2/issues/629 + +# Find the right alias/name GeneNetwork knows about aliases. But sometimes you want to check what aliases there are in mouse. If you search for BRCA2 and click on a search result, for example for [1448542_at](http://genenetwork.org/show_trait?trait_id=1448542_at&dataset=HC_M2_0606_P), you get to the 'trait page' which shows the aliases: @@ -21,11 +23,16 @@ you get to the 'trait page' which shows the aliases: GeneNetwork ignores case by default. In a search use quotes to search case sensitive. For example, [BRCA2](https://www.wikidata.org/wiki/Q17853272) on wikidata.org refers to the human gene. The mouse gene is named [Brca2](https://www.wikidata.org/wiki/Q14864738). -## Find the GeneNetwork genewiki entry -GeneNetwork maintains info on gene entries. For example for [BRCA2](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2). +# Find the GeneNetwork genewiki entry + +GeneNetwork maintains info on gene entries. For example for BRCA2: + +[](http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol=BRCA2) + +FIXME: we aim to move this functionality to markdown -## TODO +# TODO * [ ] expand story line * [ ] global search is faulty, see gn-gemtext-threads/issues/genenetwork/global-search.gmi |
