Update auto-generated docs

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>

1 files changed, 20 insertions, 17 deletions

diff --git a/rdf-documentation/dump-publication.md b/rdf-documentation/dump-publication.md
index 90a366c..708e47f 100644
--- a/rdf-documentation/dump-publication.md
+++ b/rdf-documentation/dump-publication.md
@@ -1,40 +1,44 @@
 # Publications Metadata
 ## 'dump-publication'
 
-
 ## Generated Triples:
 
 The following SQL query was executed:
 
 ```sql
-SELECT IF(Publication.PubMed_ID IS NULL, '', CONVERT(Publication.PubMed_Id, INT)) AS pmid, Publication.Id, IFNULL(PubMed_ID, '') AS pubmedId, Publication.Title, Publication.Journal, Publication.Volume, Publication.Pages, Publication.Month, Publication.Year, Publication.Authors, CAST(CONVERT(BINARY CONVERT(Publication.Abstract USING latin1) USING utf8) AS VARCHAR(100)) AS Abstract FROM Publication
+SELECT IF(Publication.PubMed_ID IS NULL, '', CONVERT(Publication.PubMed_Id, INT)) AS pmid, Publication.Id, IFNULL(PubMed_ID, '') AS pubmedId, Publication.Title, Publication.Journal, Publication.Volume, Publication.Pages, Publication.Month, IF(Publication.Year = 0, NULL, Publication.Year) AS Year, Publication.Authors, Publication.Abstract FROM Publication
 ```
 
 The above query results to triples that have the form:
 
 ```text
-pubmed:pmid -> rdf:type -> gn:publication 
-pubmed:pmid -> gn-term:pubMedId -> pubmed:pubmedId 
-pubmed:pmid -> gn-term:title -> Publication(Title) 
-pubmed:pmid -> gn-term:journal -> Publication(Journal) 
-pubmed:pmid -> gn-term:volume -> Publication(Volume) 
-pubmed:pmid -> gn-term:pages -> Publication(Pages) 
-pubmed:pmid -> gn-term:month -> Publication(Month) 
-pubmed:pmid -> gn-term:year -> Publication(Year) 
-pubmed:pmid -> gn:abstract -> Abstract 
-pubmed:pmid -> gn:author -> PublicationAuthors 
+pubmed:pmid -> rdf:type -> fabio:ResearchPaper 
+pubmed:pmid -> fabio:hasPubMedId -> pubmed:pubmedId 
+pubmed:pmid -> dct:title -> Publication(Title) 
+pubmed:pmid -> fabio:Journal -> Publication(Journal) 
+pubmed:pmid -> prism:volume -> Publication(Volume) 
+pubmed:pmid -> fabio:page -> Publication(Pages) 
+pubmed:pmid -> prism:publicationDate -> "Publication(Month)"^^xsd:gMonth 
+pubmed:pmid -> fabio:hasPublicationYear -> "Year"^^xsd:gYear 
+pubmed:pmid -> dct:abstract -> PublicationAbstract 
+pubmed:pmid -> dct:creator -> PublicationAuthors 
 ```
 Here's an example query:
 
 ```sparql
-PREFIX gn-term: <http://genenetwork.org/terms/> 
+PREFIX gnt: <http://genenetwork.org/terms/> 
+PREFIX fabio: <http://purl.org/spar/fabio/> 
+PREFIX dct: <http://purl.org/dc/terms/> 
+PREFIX prism: <http://prismstandard.org/namespaces/basic/2.0/> 
 PREFIX gn: <http://genenetwork.org/id/> 
+PREFIX gnc: <http://genenetwork.org/category/> 
 PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> 
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
 PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
 
-SELECT ?s ?p ?o WHERE { 
-    ?s rdf:type gn:publication .
+SELECT * WHERE { 
+    ?s rdf:type fabio:ResearchPaper .
     ?s ?p ?o .
 }
 ```
@@ -42,7 +46,6 @@ SELECT ?s ?p ?o WHERE {
 Expected Result:
 
 ```rdf
-gn:unpublished_1 rdf:type gn:publication .
-gn:unpublished_1 gn-term:year "0" .
+gn:unpublished_1 rdf:type fabio:ResearchPaper .
 ```