Update autogenerated docs

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>

1 files changed, 0 insertions, 95 deletions

diff --git a/rdf-documentation/dump-probeset.md b/rdf-documentation/dump-probeset.md
deleted file mode 100644
index d5729cf..0000000
--- a/rdf-documentation/dump-probeset.md
+++ /dev/null
@@ -1,95 +0,0 @@
-# ProbeSet Metadata
-## 'dump-probeset'
-
-## Generated Triples:
-
-The following SQL query was executed:
-
-```sql
-SELECT IF(NULLIF(TRIM(ProbeSet.Name), '') IS NULL, '', TRIM(ProbeSet.Name)) AS ProbeSetIdName, ProbeSet.Id, ProbeSet.Name, ProbeSet.alias, IFNULL(GeneChip.Name, '') AS GeneChipName, NULLIF(TRIM(ProbeSet.TargetId), '') AS TargetId, ProbeSet.Symbol, ProbeSet.description, NULLIF(TRIM(ProbeSet.Probe_set_target_region), '') AS Probe_set_target_region, ProbeSet.Chr, IFNULL(ProbeSet.Mb, '') AS Mb, IFNULL(ProbeSet.Mb_mm8, '') AS Mb_mm8, IFNULL(ProbeSet.Mb_2016, '') AS Mb_2016, IFNULL(ProbeSet.Probe_set_specificity, '') AS Probe_set_specificity, IFNULL(ProbeSet.Probe_set_BLAT_score, '') AS Probe_set_BLAT_score, IFNULL(ProbeSet.Probe_set_Blat_Mb_start, '') AS Probe_set_Blat_Mb_start, IFNULL(ProbeSet.Probe_set_Blat_Mb_start_2016, '') AS Probe_set_Blat_Mb_start_2016, IFNULL(ProbeSet.Probe_set_Blat_Mb_end, '') AS Probe_set_Blat_Mb_end, IFNULL(ProbeSet.Probe_set_Blat_Mb_start_2016, '') AS Probe_set_Blat_Mb_start_2016, ProbeSet.BlatSeq, ProbeSet.TargetSeq, IFNULL(ProbeSet.HomoloGeneID, '') AS HomoloGeneID, IFNULL(ProbeSet.UniProtID, '') AS UniProtID, IFNULL(ProbeSet.PubChem_ID, '') AS PubChem_ID, IFNULL(ProbeSet.KEGG_ID, '') AS KEGG_ID, IFNULL(ProbeSet.OMIM, '') AS OMIM, IFNULL(ProbeSet.ChEBI_ID, '') AS ChEBI_ID FROM ProbeSet LEFT JOIN GeneChip ON GeneChip.Id = ProbeSet.ChipId
-```
-
-The above query results to triples that have the form:
-
-```text
-gn:probeset_probesetidname -> rdf:type -> gnc:probeset 
-gn:probeset_probesetidname -> rdfs:label -> ProbeSet(Name) 
-gn:probeset_probesetidname -> skos:altLabel -> ProbeSet(alias) 
-gn:probeset_probesetidname -> gnt:hasChip -> gn:platform_genechipname 
-gn:probeset_probesetidname -> gnt:hasTargetId -> TargetId 
-gn:probeset_probesetidname -> gnt:symbol -> ProbeSet(Symbol) 
-gn:probeset_probesetidname -> dct:description -> ProbeSetdescription 
-gn:probeset_probesetidname -> gnt:targetsRegion -> Probe_set_target_region 
-gn:probeset_probesetidname -> gnt:chr -> ProbeSet(Chr) 
-gn:probeset_probesetidname -> gnt:mb -> "Mb"^^xsd:double 
-gn:probeset_probesetidname -> gnt:mbMm8 -> "Mb_mm8"^^xsd:double 
-gn:probeset_probesetidname -> gnt:mb2016 -> "Mb_2016"^^xsd:double 
-gn:probeset_probesetidname -> gnt:hasSpecificity -> Probe_set_specificity 
-gn:probeset_probesetidname -> gnt:hasBlatScore -> Probe_set_BLAT_score 
-gn:probeset_probesetidname -> gnt:hasBlatMbStart -> "Probe_set_Blat_Mb_start"^^xsd:double 
-gn:probeset_probesetidname -> gnt:hasBlatMbStart2016 -> "Probe_set_Blat_Mb_start_2016"^^xsd:double 
-gn:probeset_probesetidname -> gnt:hasBlatMbEnd -> "Probe_set_Blat_Mb_end"^^xsd:double 
-gn:probeset_probesetidname -> gnt:hasBlatMbEnd2016 -> "Probe_set_Blat_Mb_start_2016"^^xsd:double 
-gn:probeset_probesetidname -> gnt:hasBlatSeq -> ProbeSetBlatSeq 
-gn:probeset_probesetidname -> gnt:hasTargetSeq -> ProbeSetTargetSeq 
-gn:probeset_probesetidname -> gnt:hasHomologeneId -> homologene:HomoloGeneID 
-gn:probeset_probesetidname -> gnt:hasUniprotId -> uniprot:UniProtID 
-gn:probeset_probesetidname -> gnt:hasPubChemId -> pubchem:PubChem_ID 
-gn:probeset_probesetidname -> gnt:hasKeggId -> kegg:KEGG_ID 
-gn:probeset_probesetidname -> gnt:hasOmimId ->  
-gn:probeset_probesetidname -> gnt:hasChebiId -> chebi:ChEBI_ID 
-```
-Here's an example query:
-
-```sparql
-PREFIX gn: <http://genenetwork.org/id/> 
-PREFIX probeset: <http://genenetwork.org/probeset/> 
-PREFIX gnc: <http://genenetwork.org/category/> 
-PREFIX gnt: <http://genenetwork.org/term/> 
-PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 
-PREFIX kegg: <http://bio2rdf.org/ns/kegg#> 
-PREFIX pubchem: <https://pubchem.ncbi.nlm.nih.gov/> 
-PREFIX omim: <https://www.omim.org/entry/> 
-PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> 
-PREFIX uniprot: <http://purl.uniprot.org/uniprot/> 
-PREFIX chebi: <http://purl.obolibrary.org/obo/CHEBI_> 
-PREFIX dct: <http://purl.org/dc/terms/> 
-PREFIX owl: <http://www.w3.org/2002/07/owl#> 
-PREFIX homologene: <https://bio2rdf.org/homologene:> 
-PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
-PREFIX skos: <http://www.w3.org/2004/02/skos/core#> 
-
-SELECT * WHERE { 
-    ?s rdf:type gnc:probeset .
-    ?s rdfs:label "100001_at" .
-    ?s skos:altLabel "T3g; Ctg3; Ctg-3" .
-    ?s gnt:hasChip gn:platform_mg_u74av2 .
-    ?s ?p ?o .
-}
-```
-
-Expected Result:
-
-```rdf
-gn:probeset_100001_at rdf:type gnc:probeset .
-gn:probeset_100001_at rdfs:label "100001_at" .
-gn:probeset_100001_at skos:altLabel "T3g; Ctg3; Ctg-3" .
-gn:probeset_100001_at gnt:hasChip gn:platform_mg_u74av2 .
-gn:probeset_100001_at gnt:symbol "Cd3g" .
-gn:probeset_100001_at dct:description "CD3d antigen, gamma polypeptide" .
-gn:probeset_100001_at gnt:chr "9" .
-gn:probeset_100001_at gnt:mb "44.970689"^^xsd:double .
-gn:probeset_100001_at gnt:mbMm8 "44.721684"^^xsd:double .
-gn:probeset_100001_at gnt:mb2016 "44.778772"^^xsd:double .
-gn:probeset_100001_at gnt:hasSpecificity "9.3" .
-gn:probeset_100001_at gnt:hasBlatScore "186" .
-gn:probeset_100001_at gnt:hasBlatMbStart "44.970689"^^xsd:double .
-gn:probeset_100001_at gnt:hasBlatMbStart2016 "44.778772"^^xsd:double .
-gn:probeset_100001_at gnt:hasBlatMbEnd "44.971291"^^xsd:double .
-gn:probeset_100001_at gnt:hasBlatMbEnd2016 "44.778772"^^xsd:double .
-gn:probeset_100001_at gnt:hasBlatSeq "CTCTGTTGCAAAATGAACAGCTGTACAGCCCCTCAAGGACCGGGAATATGACCAGTACAGCCATCTCCAAGGAAACCAACTGAGGAAGAAGTGAACTCAGCAGGACTCAGGGTGTCCCCACAATGCATTTTGGAGAGAGCCCAGACTGCAAGCAGAGAGGAAGAACTGAGGAAAACAAGCACAGCGTGGTGTT" .
-gn:probeset_100001_at gnt:hasTargetSeq "ctctgttgcaaaatgaacagctgtaccagcccctcaaggaccgggaatatgaccagtacagccatctccaaggaaaccaactgaggaagaagtgaactcagcaggactcagggtgtccccccttntatccagcacccagaatcaaaacaatgcattttggagagagcccagtagagagattttcaaccctacaggtagactgcaagcagagaggaagaactgtcaaagaaattttggtcttttttttttttttnncaaaataaaataaaagcttggaggagccagtggtatgantnnnnnntgnancanttgtcaaccttgtttggggttnncagcaccccacccccagaccccccaaaaaaattcagtgaaggaaaacaagcacagcgtggtgtt" .
-gn:probeset_100001_at gnt:hasHomologeneId homologene:55 .
-gn:probeset_100001_at gnt:hasOmimId omim:186740 .
-```
-