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authorBonface2024-02-13 23:52:26 -0600
committerMunyoki Kilyungi2024-08-09 13:30:43 +0300
commitb2feda451ccfbeaed02dce9088d6dd228cf15861 (patch)
tree3dd2883524985114070a7770cd2e9f9bd7eb1848 /general/datasets/Sa_m2_0405_mc/tissue.rtf
parentd029d5d7f8ead1f1de8d318045004a4a6f68f5fb (diff)
downloadgn-docs-b2feda451ccfbeaed02dce9088d6dd228cf15861.tar.gz
Update dataset RTF Files.
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+<blockquote>
+<p>Animals were obtained from The Jackson Laboratory and housed for several weeks at BIDMC until they reached ~2 months of age (range from 55 to 62 days). Mice were killed by cervical dislocation and brains were removed and placed in RNAlater for 20 to 25 minutes prior to dissection. Cerebella and olfactory bulbs were removed; brains were hemisected, and both striata were dissected using a medial approach by GD Rosen that typically yields 5 to 7 mg of tissue per side. The purity of this dissection has been validated by an analysis of acetylcholinestase activity. A pool of dissected tissue from 3 or 4 adults (approximately 25 to 30 mg of tissue) of the same strain, sex, and age was collected in one session and used to generate cRNA samples.</p>
+</blockquote>
+
+<blockquote>The table below lists the arrays by strain, sex, sample name, and batch ID. Each array was hybridized to a pool of mRNA from 3 to 4 mice. All mice were between 55 and 62 days.</blockquote>
+
+<blockquote>
+<table align="Center" border="1" cellpadding="0" cellspacing="0" style="width:75%">
+ <tbody>
+ <tr>
+ <td>
+ <table border="1" cellpadding="5" cellspacing="1" style="width:100%">
+ <tbody>
+ <tr>
+ <td>Id</td>
+ <td>Strain</td>
+ <td>Sex</td>
+ <td>Sample_name</td>
+ <td>BatchId</td>
+ </tr>
+ <tr>
+ <td>1</td>
+ <td>C57BL/6J</td>
+ <td>M</td>
+ <td>Chip41_Batch02_B6_M_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>2</td>
+ <td>C57BL/6J</td>
+ <td>M</td>
+ <td>Chip11_Batch03_B6_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>3</td>
+ <td>BXD1</td>
+ <td>F</td>
+ <td>Chip03_Batch03_BXD1_F_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>4</td>
+ <td>BXD1</td>
+ <td>M</td>
+ <td>Chip04_Batch03_BXD1_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>5</td>
+ <td>BXD2</td>
+ <td>F</td>
+ <td>Chip20_Rerun01_BXD2_F_Str</td>
+ <td>Rerun01</td>
+ </tr>
+ <tr>
+ <td>6</td>
+ <td>BXD2</td>
+ <td>M</td>
+ <td>Chip05_Batch01_BXD2_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>7</td>
+ <td>BXD5</td>
+ <td>F</td>
+ <td>Chip10_Batch03_BXD5_F_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>8</td>
+ <td>BXD5</td>
+ <td>M</td>
+ <td>Chip12_Batch03_BXD5_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>9</td>
+ <td>BXD6</td>
+ <td>F</td>
+ <td>Chip38_Batch02_BXD6_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>10</td>
+ <td>BXD6</td>
+ <td>M</td>
+ <td>Chip39_Batch02_BXD6_M_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>11</td>
+ <td>BXD8</td>
+ <td>F</td>
+ <td>Chip07_Batch03_BXD8_F_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>12</td>
+ <td>BXD8</td>
+ <td>M</td>
+ <td>Chip02_Batch03_BXD8_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>13</td>
+ <td>BXD9</td>
+ <td>F</td>
+ <td>Chip16_Batch01_BXD9_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>14</td>
+ <td>BXD9</td>
+ <td>M</td>
+ <td>Chip10_Batch01_BXD9_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>15</td>
+ <td>BXD11</td>
+ <td>F</td>
+ <td>Chip31_Batch02_BXD11_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>16</td>
+ <td>BXD12</td>
+ <td>F</td>
+ <td>Chip11_Batch01_BXD12_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>17</td>
+ <td>BXD12</td>
+ <td>M</td>
+ <td>Chip18_Batch03_BXD12_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>18</td>
+ <td>BXD13</td>
+ <td>F</td>
+ <td>Chip33_Batch02_BXD13_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>19</td>
+ <td>BXD14</td>
+ <td>F</td>
+ <td>Chip48_Batch02_BXD14_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>20</td>
+ <td>BXD14</td>
+ <td>M</td>
+ <td>Chip47_Rerun01_BXD14_M_Str</td>
+ <td>Rerun01</td>
+ </tr>
+ <tr>
+ <td>21</td>
+ <td>BXD15</td>
+ <td>F</td>
+ <td>Chip21_Batch01_BXD15_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>22</td>
+ <td>BXD15</td>
+ <td>M</td>
+ <td>Chip13_Batch01_BXD15_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>23</td>
+ <td>BXD16</td>
+ <td>F</td>
+ <td>Chip36_Batch02_BXD16_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>24</td>
+ <td>BXD16</td>
+ <td>M</td>
+ <td>Chip44_Rerun01_BXD16_M_Str</td>
+ <td>Rerun01</td>
+ </tr>
+ <tr>
+ <td>25</td>
+ <td>BXD18</td>
+ <td>F</td>
+ <td>Chip15_Batch03_BXD18_F_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>26</td>
+ <td>BXD18</td>
+ <td>M</td>
+ <td>Chip19_Batch03_BXD18_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>27</td>
+ <td>BXD19</td>
+ <td>F</td>
+ <td>Chip19_Batch01_BXD19_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>28</td>
+ <td>BXD20</td>
+ <td>F</td>
+ <td>Chip14_Batch03_BXD20_F_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>29</td>
+ <td>BXD21</td>
+ <td>F</td>
+ <td>Chip18_Batch01_BXD21_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>30</td>
+ <td>BXD21</td>
+ <td>M</td>
+ <td>Chip09_Batch01_BXD21_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>31</td>
+ <td>BXD22</td>
+ <td>M</td>
+ <td>Chip13_Batch03_BXD22_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>32</td>
+ <td>BXD23</td>
+ <td>M</td>
+ <td>Chip01_Batch03_BXD23_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>33</td>
+ <td>BXD24</td>
+ <td>M</td>
+ <td>Chip17_Batch03_BXD24_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>34</td>
+ <td>BXD27</td>
+ <td>F</td>
+ <td>Chip29_Batch02_BXD27_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>35</td>
+ <td>BXD27</td>
+ <td>M</td>
+ <td>Chip40_Batch02_BXD27_M_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>36</td>
+ <td>BXD28</td>
+ <td>F</td>
+ <td>Chip06_Batch01_BXD28_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>37</td>
+ <td>BXD28</td>
+ <td>M</td>
+ <td>Chip23_Batch01_BXD28_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>38</td>
+ <td>BXD29</td>
+ <td>F</td>
+ <td>Chip45_Batch02_BXD29_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>39</td>
+ <td>BXD29</td>
+ <td>M</td>
+ <td>Chip42_Batch02_BXD29_M_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>40</td>
+ <td>BXD31</td>
+ <td>F</td>
+ <td>Chip14_Batch01_BXD31_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>41</td>
+ <td>BXD31</td>
+ <td>M</td>
+ <td>Chip09_Batch03_BXD31_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>42</td>
+ <td>BXD32</td>
+ <td>M</td>
+ <td>Chip30_Batch02_BXD32_M_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>43</td>
+ <td>BXD33</td>
+ <td>F</td>
+ <td>Chip27_Rerun01_BXD33_F_Str</td>
+ <td>Rerun01</td>
+ </tr>
+ <tr>
+ <td>44</td>
+ <td>BXD33</td>
+ <td>M</td>
+ <td>Chip34_Batch02_BXD33_M_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>45</td>
+ <td>BXD34</td>
+ <td>F</td>
+ <td>Chip03_Batch01_BXD34_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>46</td>
+ <td>BXD34</td>
+ <td>M</td>
+ <td>Chip07_Batch01_BXD34_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>47</td>
+ <td>BXD36</td>
+ <td>F</td>
+ <td>Chip22_Batch03_BXD36_F_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>48</td>
+ <td>BXD36</td>
+ <td>M</td>
+ <td>Chip24_Batch03_BXD36_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>49</td>
+ <td>BXD38</td>
+ <td>F</td>
+ <td>Chip17_Batch01_BXD38_F_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>50</td>
+ <td>BXD38</td>
+ <td>M</td>
+ <td>Chip24_Batch01_BXD38_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>51</td>
+ <td>BXD39</td>
+ <td>M</td>
+ <td>Chip20_Batch03_BXD39_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>52</td>
+ <td>BXD39</td>
+ <td>F</td>
+ <td>Chip23_Batch03_BXD39_F_Str</td>
+ <td>Batch03</td>
+ </tr>
+ <tr>
+ <td>53</td>
+ <td>BXD39</td>
+ <td>M</td>
+ <td>Chip43_Rerun01_BXD39_M_Str</td>
+ <td>Rerun01</td>
+ </tr>
+ <tr>
+ <td>54</td>
+ <td>BXD40</td>
+ <td>F</td>
+ <td>Chip08_Rerun01_BXD40_F_Str</td>
+ <td>Rerun01</td>
+ </tr>
+ <tr>
+ <td>55</td>
+ <td>BXD40</td>
+ <td>M</td>
+ <td>Chip22_Batch01_BXD40_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>56</td>
+ <td>BXD42</td>
+ <td>F</td>
+ <td>Chip35_Batch02_BXD42_F_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>57</td>
+ <td>BXD42</td>
+ <td>M</td>
+ <td>Chip32_Batch02_BXD42_M_Str</td>
+ <td>Batch02</td>
+ </tr>
+ <tr>
+ <td>58</td>
+ <td>DBA/2J</td>
+ <td>M</td>
+ <td>Chip02_Batch01_D2_M_Str</td>
+ <td>Batch01</td>
+ </tr>
+ <tr>
+ <td>59</td>
+ <td>DBA/2J</td>
+ <td>M</td>
+ <td>Chip05_Batch03_D2_M_Str</td>
+ <td>Batch03</td>
+ </tr>
+ </tbody>
+ </table>
+ </td>
+ </tr>
+ </tbody>
+</table>
+</blockquote>