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authorBonface2024-02-09 09:41:28 -0600
committerMunyoki Kilyungi2024-08-09 13:30:43 +0300
commitd029d5d7f8ead1f1de8d318045004a4a6f68f5fb (patch)
tree33c7ff40e3f953d030ed08f468f7afb1dfcba9e6 /general/datasets/SUH_Liv_RMA_0611/processing.rtf
parent769ff7825f5d8d36d541e90534c07f1985899973 (diff)
downloadgn-docs-d029d5d7f8ead1f1de8d318045004a4a6f68f5fb.tar.gz
Update dataset RTF Files.
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+<p>QC Results: This data set consists of expression data for 33 strains. A total of 166 probe sets are associated with LOD scores above 10 and the highest linkage score of 22 for <em>Rpl3</em> (probe set 10430669). Strain distribution patterns of eQTLs with a Mendelian expression pattern match those of their closest markers perfectly, verifying that there are no errors of strain assignment in this data set.</p>
+
+<p>Analysis of XIST probe set 1060617 confirms that most strains are purely female. However, only males were available for BXD1 and BXD6. BXD28 and BXD33 data are based on the average of two female samples and one male sample. All other strains are purely female.</p>
+
+<p>Data were analyzed by Rabea Hall and Dr. Frank Lammert at the Universit&auml;tsklinikum des Saarlandes in Homburg, Germany.</p>
+
+<p>Contacts: rabea.hall at uks.eu, Rabea.Hall at uniklinikum-saarland.de, and frank.lammert at uks.eu</p>
+
+<p><strong>Table updated 7-19-2011</strong></p>
+
+<blockquote>
+<table border="1" cellpadding="0" cellspacing="0" style="width:600px">
+ <tbody>
+ <tr>
+ <td>
+ <table align="left" border="1" cellpadding="5" cellspacing="1" style="width:600px">
+ <tbody>
+ <tr>
+ <td>Index</td>
+ <td>Sample ID</td>
+ <td>Strain ID</td>
+ <td>Treatment</td>
+ </tr>
+ <tr>
+ <td>1</td>
+ <td>504</td>
+ <td>B6D2F1</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>2</td>
+ <td>506</td>
+ <td>B6D2F1</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>3</td>
+ <td>508</td>
+ <td>B6D2F1</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>4</td>
+ <td>414</td>
+ <td>C57BL/6J</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>5</td>
+ <td>488</td>
+ <td>C57BL/6J</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>6</td>
+ <td>489</td>
+ <td>C57BL/6J</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>7</td>
+ <td>B6J1</td>
+ <td>C57BL/6J</td>
+ <td>untreated control</td>
+ </tr>
+ <tr>
+ <td>8</td>
+ <td>B6J2</td>
+ <td>C57BL/6J</td>
+ <td>untreated control</td>
+ </tr>
+ <tr>
+ <td>9</td>
+ <td>B6J3</td>
+ <td>C57BL/6J</td>
+ <td>untreated control</td>
+ </tr>
+ <tr>
+ <td>10</td>
+ <td>449</td>
+ <td>DBA/2J</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>11</td>
+ <td>450</td>
+ <td>DBA/2J</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>12</td>
+ <td>451</td>
+ <td>DBA/2J</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>13</td>
+ <td>219.1</td>
+ <td>DBA/2J</td>
+ <td>untreated control</td>
+ </tr>
+ <tr>
+ <td>14</td>
+ <td>219.2</td>
+ <td>DBA/2J</td>
+ <td>untreated control</td>
+ </tr>
+ <tr>
+ <td>15</td>
+ <td>219.3</td>
+ <td>DBA/2J</td>
+ <td>untreated control</td>
+ </tr>
+ <tr>
+ <td>16</td>
+ <td>276</td>
+ <td>BXD1</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>17</td>
+ <td>278</td>
+ <td>BXD1</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>18</td>
+ <td>279</td>
+ <td>BXD1</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>19</td>
+ <td>353</td>
+ <td>BXD2</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>20</td>
+ <td>357</td>
+ <td>BXD2</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>21</td>
+ <td>358</td>
+ <td>BXD2</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>22</td>
+ <td>272</td>
+ <td>BXD6</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>23</td>
+ <td>273</td>
+ <td>BXD6</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>24</td>
+ <td>274</td>
+ <td>BXD6</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>25</td>
+ <td>405</td>
+ <td>BXD11</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>26</td>
+ <td>406</td>
+ <td>BXD11</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>27</td>
+ <td>408</td>
+ <td>BXD11</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>28</td>
+ <td>239</td>
+ <td>BXD12</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>29</td>
+ <td>240</td>
+ <td>BXD12</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>30</td>
+ <td>241</td>
+ <td>BXD12</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>31</td>
+ <td>553</td>
+ <td>BXD13</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>32</td>
+ <td>554</td>
+ <td>BXD13</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>33</td>
+ <td>555</td>
+ <td>BXD13</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>34</td>
+ <td>249</td>
+ <td>BXD14</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>35</td>
+ <td>250</td>
+ <td>BXD14</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>36</td>
+ <td>288</td>
+ <td>BXD14</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>37</td>
+ <td>191</td>
+ <td>BXD19</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>38</td>
+ <td>644</td>
+ <td>BXD19</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>39</td>
+ <td>645</td>
+ <td>BXD19</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>40</td>
+ <td>442</td>
+ <td>BXD24a</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>41</td>
+ <td>443</td>
+ <td>BXD24a</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>42</td>
+ <td>444</td>
+ <td>BXD24a</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>43</td>
+ <td>216</td>
+ <td>BXD27</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>44</td>
+ <td>218</td>
+ <td>BXD27</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>45</td>
+ <td>290</td>
+ <td>BXD27</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>46</td>
+ <td>28</td>
+ <td>BXD28</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>47</td>
+ <td>71</td>
+ <td>BXD28</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>48</td>
+ <td>129</td>
+ <td>BXD28</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>49</td>
+ <td>219</td>
+ <td>BXD31</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>50</td>
+ <td>220</td>
+ <td>BXD31</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>51</td>
+ <td>231</td>
+ <td>BXD31</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>52</td>
+ <td>549</td>
+ <td>BXD32</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>53</td>
+ <td>550</td>
+ <td>BXD32</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>54</td>
+ <td>551</td>
+ <td>BXD32</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>55</td>
+ <td>139</td>
+ <td>BXD33</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>56</td>
+ <td>140</td>
+ <td>BXD33</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>57</td>
+ <td>559</td>
+ <td>BXD33</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>58</td>
+ <td>132</td>
+ <td>BXD34</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>59</td>
+ <td>146</td>
+ <td>BXD34</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>60</td>
+ <td>147</td>
+ <td>BXD34</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>61</td>
+ <td>293</td>
+ <td>BXD39</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>62</td>
+ <td>597</td>
+ <td>BXD39</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>63</td>
+ <td>599</td>
+ <td>BXD39</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>64</td>
+ <td>154</td>
+ <td>BXD40</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>65</td>
+ <td>570</td>
+ <td>BXD40</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>66</td>
+ <td>572</td>
+ <td>BXD40</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>67</td>
+ <td>361</td>
+ <td>BXD42</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>68</td>
+ <td>362</td>
+ <td>BXD42</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>69</td>
+ <td>373</td>
+ <td>BXD42</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>70</td>
+ <td>428</td>
+ <td>BXD43</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>71</td>
+ <td>429</td>
+ <td>BXD43</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>72</td>
+ <td>556</td>
+ <td>BXD43</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>73</td>
+ <td>472</td>
+ <td>BXD51</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>74</td>
+ <td>473</td>
+ <td>BXD51</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>75</td>
+ <td>474</td>
+ <td>BXD51</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>76</td>
+ <td>533</td>
+ <td>BXD55</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>77</td>
+ <td>534</td>
+ <td>BXD55</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>78</td>
+ <td>535</td>
+ <td>BXD55</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>79</td>
+ <td>519</td>
+ <td>BXD62</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>80</td>
+ <td>520</td>
+ <td>BXD62</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>81</td>
+ <td>521</td>
+ <td>BXD62</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>82</td>
+ <td>463</td>
+ <td>BXD65</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>83</td>
+ <td>464</td>
+ <td>BXD65</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>84</td>
+ <td>465</td>
+ <td>BXD65</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>85</td>
+ <td>327</td>
+ <td>BXD69</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>86</td>
+ <td>346</td>
+ <td>BXD69</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>87</td>
+ <td>347</td>
+ <td>BXD69</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>88</td>
+ <td>614</td>
+ <td>BXD73</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>89</td>
+ <td>616</td>
+ <td>BXD73</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>90</td>
+ <td>619</td>
+ <td>BXD73</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>91</td>
+ <td>395</td>
+ <td>BXD75</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>92</td>
+ <td>482</td>
+ <td>BXD75</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>93</td>
+ <td>483</td>
+ <td>BXD75</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>94</td>
+ <td>317</td>
+ <td>BXD87</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>95</td>
+ <td>319</td>
+ <td>BXD87</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>96</td>
+ <td>322</td>
+ <td>BXD87</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>97</td>
+ <td>374</td>
+ <td>BXD90</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>98</td>
+ <td>388</td>
+ <td>BXD90</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>99</td>
+ <td>389</td>
+ <td>BXD90</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>100</td>
+ <td>402</td>
+ <td>BXD96</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>101</td>
+ <td>403</td>
+ <td>BXD96</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>102</td>
+ <td>404</td>
+ <td>BXD96</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>103</td>
+ <td>584</td>
+ <td>BXD98</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>104</td>
+ <td>585</td>
+ <td>BXD98</td>
+ <td>CCl4</td>
+ </tr>
+ <tr>
+ <td>105</td>
+ <td>607</td>
+ <td>BXD98</td>
+ <td>CCl4</td>
+ </tr>
+ </tbody>
+ </table>
+ </td>
+ </tr>
+ </tbody>
+</table>
+</blockquote>
generated by cgit v1.2.3 (git 2.44.0) at 2024-09-19 22:11:32 +0000