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| author | Bonface <bonfacem@tux02.uthsc.edu> | 2024-02-13 23:52:26 -0600 |
|---|---|---|
| committer | Munyoki Kilyungi <me@bonfacemunyoki.com> | 2024-08-09 13:30:43 +0300 |
| commit | b2feda451ccfbeaed02dce9088d6dd228cf15861 (patch) | |
| tree | 3dd2883524985114070a7770cd2e9f9bd7eb1848 /general/datasets/Oncretmogene2_0413/cases.rtf | |
| parent | d029d5d7f8ead1f1de8d318045004a4a6f68f5fb (diff) | |
| download | gn-docs-b2feda451ccfbeaed02dce9088d6dd228cf15861.tar.gz | |
Update dataset RTF Files.
Diffstat (limited to 'general/datasets/Oncretmogene2_0413/cases.rtf')
| -rw-r--r-- | general/datasets/Oncretmogene2_0413/cases.rtf | 1728 |
1 files changed, 1728 insertions, 0 deletions
diff --git a/general/datasets/Oncretmogene2_0413/cases.rtf b/general/datasets/Oncretmogene2_0413/cases.rtf new file mode 100644 index 0000000..6b36c70 --- /dev/null +++ b/general/datasets/Oncretmogene2_0413/cases.rtf @@ -0,0 +1,1728 @@ +<p>Almost all animals are young adults between 60 and 90 days of age (Table 1, minimum age is 50 and maximum age is 134 days). We measured expression in conventional inbred strains, BXD recombinant inbred (RI) strains, and reciprocal F1s between C57BL/6J and DBA/2J. BXD strains: The first 32 of these strains are from the Taylor series of BXD strains generated at the Jackson Laboratory by Benjamin A. Taylor. BXD1 through BXD32 were started in the late 1970s, whereas BXD33 through 42 were started in the 1990s. In 2004, BXD24/TyJ developed a spontaneous mutation, rd16 which resulted in retinal degeneration and was renamed BXD24b/TyJ (BXD24 in this database). The strain, BXD24a, was cryo-recovered in 2004 from 1988 embryo stocks (F80) and does not exhibit retinal degeneration. In 2009, BXD24b was renamed BXD24/TyJ-Cep290rd16/J by JAX Labs to reflect the discovery of the genetic basis of the mutation. At the same time BXD24a was then referred to just as BXD24/TyJ by Jax Labs, but still called BXD24a in this dataset. The other 36 BXD strains (BXD43 and higher) were bred by Lu Lu, Jeremy Peirce, Lee M. Silver, and Robert W. Williams starting in 1997 using B6D2 generation 10 advanced intercross progeny. This modified breeding protocol doubles the number of recombinations per BXD strain and improves mapping resolution (Peirce et al. 2004). All of the Taylor series of BXD strains and many of the new BXD strains are available from the Jackson Laboratory. All of the new BXD strains (BXD43 and higher) are also available directly from Lu Lu and colleagues at the University of Tennessee Health Science Center in Memphis, TN, USA. BXD24/TyJ is now known as BXD24b/TyJ and has nearly complete retinal degeneration. BXD24a/TyJ, a 1988 F80 inbred stock that has been rederived from cryogenic storage, does not have retinal degeneration (stock number 005243) and is an ideal coisogenic control, but is not included in the HEI data set.</p> + +<blockquote> +<table border="1" cellpadding="0" cellspacing="0" style="width:600px"> + <tbody> + <tr> + <td> + <table align="left" border="1" cellpadding="5" cellspacing="1" class="sortable" style="width:600px"> + <tbody> + <tr> + <td>Index</td> + <td>EIGC ID (LIMS ID)</td> + <td>Strain</td> + <td>Sex</td> + <td>Age at harvest</td> + <td>RIN Score</td> + </tr> + <tr> + <td>1</td> + <td>602</td> + <td>BXD9</td> + <td>F</td> + <td>133</td> + <td>9.1</td> + </tr> + <tr> + <td>2</td> + <td>603</td> + <td>BXD9</td> + <td>M</td> + <td>100</td> + <td>9.5</td> + </tr> + <tr> + <td>3</td> + <td>604</td> + <td>BXD40</td> + <td>F</td> + <td>100</td> + <td>9.4</td> + </tr> + <tr> + <td>4</td> + <td>605</td> + <td>BXD40</td> + <td>M</td> + <td>100</td> + <td>9.1</td> + </tr> + <tr> + <td>5</td> + <td>606</td> + <td>BXD48</td> + <td>F</td> + <td>75</td> + <td>9.1</td> + </tr> + <tr> + <td>6</td> + <td>607</td> + <td>BXD48</td> + <td>M</td> + <td>75</td> + <td>8.6</td> + </tr> + <tr> + <td>7</td> + <td>608</td> + <td>BXD63</td> + <td>F</td> + <td>75</td> + <td>9.2</td> + </tr> + <tr> + <td>8</td> + <td>609</td> + <td>BXD63</td> + <td>M</td> + <td>61</td> + <td>9.4</td> + </tr> + <tr> + <td>9</td> + <td>612</td> + <td>BXD73</td> + <td>M</td> + <td>108</td> + <td>10</td> + </tr> + <tr> + <td>10</td> + <td>614</td> + <td>BXD87</td> + <td>M</td> + <td>85</td> + <td>9.2</td> + </tr> + <tr> + <td>11</td> + <td>615</td> + <td>BXD87</td> + <td>F</td> + <td>85</td> + <td>9.9</td> + </tr> + <tr> + <td>12</td> + <td>616</td> + <td>BXD69</td> + <td>F</td> + <td>76</td> + <td>9.3</td> + </tr> + <tr> + <td>13</td> + <td>617</td> + <td>BXD69</td> + <td>M</td> + <td>100</td> + <td>10</td> + </tr> + <tr> + <td>14</td> + <td>618</td> + <td>BXD51</td> + <td>M</td> + <td>82</td> + <td>8.9</td> + </tr> + <tr> + <td>15</td> + <td>619</td> + <td>BXD92 (BXD65b)</td> + <td>M</td> + <td>82</td> + <td>8.8</td> + </tr> + <tr> + <td>16</td> + <td>620</td> + <td>BXD92 (BXD65b)</td> + <td>F</td> + <td>82</td> + <td>8.8</td> + </tr> + <tr> + <td>17</td> + <td>635</td> + <td>BXD100</td> + <td>M</td> + <td>70</td> + <td>9</td> + </tr> + <tr> + <td>18</td> + <td>636</td> + <td>BXD100</td> + <td>M</td> + <td>70</td> + <td>8.8</td> + </tr> + <tr> + <td>19</td> + <td>652</td> + <td>BXD92 (BXD65b)</td> + <td>F</td> + <td>64</td> + <td>9</td> + </tr> + <tr> + <td>20</td> + <td>653</td> + <td>BXD87</td> + <td>F</td> + <td>67</td> + <td>9.7</td> + </tr> + <tr> + <td>21</td> + <td>654</td> + <td>BXD87</td> + <td>M</td> + <td>67</td> + <td>8.9</td> + </tr> + <tr> + <td>22</td> + <td>655</td> + <td>BXD63</td> + <td>M</td> + <td>71</td> + <td>9</td> + </tr> + <tr> + <td>23</td> + <td>660</td> + <td>BXD69</td> + <td>M</td> + <td>97</td> + <td>10</td> + </tr> + <tr> + <td>24</td> + <td>687</td> + <td>BXD6</td> + <td>M</td> + <td>85</td> + <td>7.7</td> + </tr> + <tr> + <td>25</td> + <td>688</td> + <td>BXD6</td> + <td>M</td> + <td>85</td> + <td>9.4</td> + </tr> + <tr> + <td>26</td> + <td>690</td> + <td>BXD12</td> + <td>F</td> + <td>83</td> + <td>10</td> + </tr> + <tr> + <td>27</td> + <td>691</td> + <td>BXD12</td> + <td>F</td> + <td>83</td> + <td>10</td> + </tr> + <tr> + <td>28</td> + <td>692</td> + <td>BXD12</td> + <td>M</td> + <td>83</td> + <td>10</td> + </tr> + <tr> + <td>29</td> + <td>695</td> + <td>BXD5</td> + <td>F</td> + <td>77</td> + <td>10</td> + </tr> + <tr> + <td>30</td> + <td>696</td> + <td>BXD5</td> + <td>M</td> + <td>77</td> + <td>10</td> + </tr> + <tr> + <td>31</td> + <td>698</td> + <td>BXD5</td> + <td>F</td> + <td>77</td> + <td>9.9</td> + </tr> + <tr> + <td>32</td> + <td>699</td> + <td>BXD5</td> + <td>F</td> + <td>77</td> + <td>10</td> + </tr> + <tr> + <td>33</td> + <td>701</td> + <td>BXD8</td> + <td>M</td> + <td>79</td> + <td>10</td> + </tr> + <tr> + <td>34</td> + <td>702</td> + <td>BXD8</td> + <td>M</td> + <td>79</td> + <td>10</td> + </tr> + <tr> + <td>35</td> + <td>705</td> + <td>BXD8</td> + <td>F</td> + <td>77</td> + <td>9.2</td> + </tr> + <tr> + <td>36</td> + <td>707</td> + <td>BXD15</td> + <td>F</td> + <td>77</td> + <td>9.4</td> + </tr> + <tr> + <td>37</td> + <td>708</td> + <td>BXD15</td> + <td>F</td> + <td>77</td> + <td>9.1</td> + </tr> + <tr> + <td>38</td> + <td>710</td> + <td>BXD15</td> + <td>M</td> + <td>77</td> + <td>9.1</td> + </tr> + <tr> + <td>39</td> + <td>713</td> + <td>BXD22</td> + <td>F</td> + <td>71</td> + <td>9.5</td> + </tr> + <tr> + <td>40</td> + <td>714</td> + <td>BXD22</td> + <td>F</td> + <td>71</td> + <td>9.7</td> + </tr> + <tr> + <td>41</td> + <td>716</td> + <td>BXD22</td> + <td>M</td> + <td>71</td> + <td>9.1</td> + </tr> + <tr> + <td>42</td> + <td>717</td> + <td>BXD22</td> + <td>M</td> + <td>71</td> + <td>9.1</td> + </tr> + <tr> + <td>43</td> + <td>719</td> + <td>BXD14</td> + <td>F</td> + <td>70</td> + <td>9.2</td> + </tr> + <tr> + <td>44</td> + <td>722</td> + <td>BXD14</td> + <td>M</td> + <td>70</td> + <td>8.9</td> + </tr> + <tr> + <td>45</td> + <td>723</td> + <td>BXD14</td> + <td>M</td> + <td>70</td> + <td>9.2</td> + </tr> + <tr> + <td>46</td> + <td>725</td> + <td>BXD18</td> + <td>F</td> + <td>70</td> + <td>9</td> + </tr> + <tr> + <td>47</td> + <td>726</td> + <td>BXD18</td> + <td>F</td> + <td>70</td> + <td>9.1</td> + </tr> + <tr> + <td>48</td> + <td>728</td> + <td>BXD18</td> + <td>M</td> + <td>70</td> + <td>9.1</td> + </tr> + <tr> + <td>49</td> + <td>729</td> + <td>BXD18</td> + <td>M</td> + <td>70</td> + <td>9.2</td> + </tr> + <tr> + <td>50</td> + <td>731</td> + <td>BXD19</td> + <td>F</td> + <td>66</td> + <td>9.3</td> + </tr> + <tr> + <td>51</td> + <td>732</td> + <td>BXD19</td> + <td>F</td> + <td>66</td> + <td>9.4</td> + </tr> + <tr> + <td>52</td> + <td>734</td> + <td>BXD19</td> + <td>M</td> + <td>66</td> + <td>9.8</td> + </tr> + <tr> + <td>53</td> + <td>735</td> + <td>BXD19</td> + <td>M</td> + <td>66</td> + <td>9.4</td> + </tr> + <tr> + <td>54</td> + <td>737</td> + <td>BXD21</td> + <td>F</td> + <td>71</td> + <td>9.7</td> + </tr> + <tr> + <td>55</td> + <td>738</td> + <td>BXD21</td> + <td>F</td> + <td>71</td> + <td>9.6</td> + </tr> + <tr> + <td>56</td> + <td>740</td> + <td>BXD21</td> + <td>M</td> + <td>71</td> + <td>9.1</td> + </tr> + <tr> + <td>57</td> + <td>741</td> + <td>BXD21</td> + <td>M</td> + <td>71</td> + <td>9.7</td> + </tr> + <tr> + <td>58</td> + <td>743</td> + <td>BXD2</td> + <td>F</td> + <td>70</td> + <td>8.3</td> + </tr> + <tr> + <td>59</td> + <td>744</td> + <td>BXD2</td> + <td>F</td> + <td>70</td> + <td>8.6</td> + </tr> + <tr> + <td>60</td> + <td>746</td> + <td>BXD2</td> + <td>M</td> + <td>70</td> + <td>7.5</td> + </tr> + <tr> + <td>61</td> + <td>747</td> + <td>BXD2</td> + <td>M</td> + <td>77</td> + <td>8.6</td> + </tr> + <tr> + <td>62</td> + <td>768</td> + <td>BXD48</td> + <td>M</td> + <td>121</td> + <td>9.4</td> + </tr> + <tr> + <td>63</td> + <td>770</td> + <td>BXD92 (BXD65b)</td> + <td>M</td> + <td>65</td> + <td>10</td> + </tr> + <tr> + <td>64</td> + <td>771</td> + <td>BXD101</td> + <td>F</td> + <td>85</td> + <td>8.3</td> + </tr> + <tr> + <td>65</td> + <td>772</td> + <td>BXD101</td> + <td>F</td> + <td>85</td> + <td>9.3</td> + </tr> + <tr> + <td>66</td> + <td>773</td> + <td>BXD101</td> + <td>M</td> + <td>86</td> + <td>9.5</td> + </tr> + <tr> + <td>67</td> + <td>774</td> + <td>BXD101</td> + <td>M</td> + <td>86</td> + <td>9.8</td> + </tr> + <tr> + <td>68</td> + <td>775</td> + <td>BXD102</td> + <td>F</td> + <td>66</td> + <td>9.5</td> + </tr> + <tr> + <td>69</td> + <td>776</td> + <td>BXD102</td> + <td>F</td> + <td>66</td> + <td>10</td> + </tr> + <tr> + <td>70</td> + <td>777</td> + <td>BXD102</td> + <td>M</td> + <td>84</td> + <td>9.6</td> + </tr> + <tr> + <td>71</td> + <td>787</td> + <td>BXD60</td> + <td>M</td> + <td>86</td> + <td>9.9</td> + </tr> + <tr> + <td>72</td> + <td>788</td> + <td>BXD60</td> + <td>M</td> + <td>86</td> + <td>9.9</td> + </tr> + <tr> + <td>73</td> + <td>789</td> + <td>BXD63</td> + <td>F</td> + <td>115</td> + <td>9.7</td> + </tr> + <tr> + <td>74</td> + <td>790</td> + <td>BXD100</td> + <td>F</td> + <td>72</td> + <td>9.8</td> + </tr> + <tr> + <td>75</td> + <td>791</td> + <td>BXD100</td> + <td>F</td> + <td>72</td> + <td>10</td> + </tr> + <tr> + <td>76</td> + <td>818</td> + <td>BXD51</td> + <td>F</td> + <td>77</td> + <td>9.7</td> + </tr> + <tr> + <td>77</td> + <td>819</td> + <td>BXD51</td> + <td>F</td> + <td>77</td> + <td>9.6</td> + </tr> + <tr> + <td>78</td> + <td>820</td> + <td>BXD51</td> + <td>M</td> + <td>72</td> + <td>9.7</td> + </tr> + <tr> + <td>79</td> + <td>821</td> + <td>BXD65</td> + <td>M</td> + <td>72</td> + <td>9.6</td> + </tr> + <tr> + <td>80</td> + <td>822</td> + <td>BXD65</td> + <td>M</td> + <td>65</td> + <td>9.5</td> + </tr> + <tr> + <td>81</td> + <td>825</td> + <td>BXD65</td> + <td>F</td> + <td>72</td> + <td>9.5</td> + </tr> + <tr> + <td>82</td> + <td>827</td> + <td>BXD86</td> + <td>M</td> + <td>69</td> + <td>9.1</td> + </tr> + <tr> + <td>83</td> + <td>828</td> + <td>BXD86</td> + <td>M</td> + <td>69</td> + <td>9.4</td> + </tr> + <tr> + <td>84</td> + <td>829</td> + <td>BXD90</td> + <td>F</td> + <td>69</td> + <td>9.6</td> + </tr> + <tr> + <td>85</td> + <td>831</td> + <td>BXD9</td> + <td>M</td> + <td>127</td> + <td>9.7</td> + </tr> + <tr> + <td>86</td> + <td>832</td> + <td>BXD39</td> + <td>F</td> + <td>99</td> + <td>9.4</td> + </tr> + <tr> + <td>87</td> + <td>833</td> + <td>BXD39</td> + <td>F</td> + <td>107</td> + <td>9.3</td> + </tr> + <tr> + <td>88</td> + <td>834</td> + <td>BXD60</td> + <td>F</td> + <td>107</td> + <td>9.5</td> + </tr> + <tr> + <td>89</td> + <td>836</td> + <td>BXD84</td> + <td>M</td> + <td>103</td> + <td>9.7</td> + </tr> + <tr> + <td>90</td> + <td>846</td> + <td>BXD39</td> + <td>M</td> + <td>63</td> + <td>9.7</td> + </tr> + <tr> + <td>91</td> + <td>847</td> + <td>BXD39</td> + <td>M</td> + <td>63</td> + <td>9.8</td> + </tr> + <tr> + <td>92</td> + <td>849</td> + <td>BXD20</td> + <td>F</td> + <td>70</td> + <td>10</td> + </tr> + <tr> + <td>93</td> + <td>850</td> + <td>BXD20</td> + <td>M</td> + <td>70</td> + <td>10</td> + </tr> + <tr> + <td>94</td> + <td>851</td> + <td>BXD20</td> + <td>*</td> + <td>70</td> + <td>9.5</td> + </tr> + <tr> + <td>95</td> + <td>855</td> + <td>DBA/2J</td> + <td>F</td> + <td>78</td> + <td>9.7</td> + </tr> + <tr> + <td>96</td> + <td>856</td> + <td>DBA/2J</td> + <td>F</td> + <td>78</td> + <td>10</td> + </tr> + <tr> + <td>97</td> + <td>857</td> + <td>DBA/2J</td> + <td>M</td> + <td>78</td> + <td>10</td> + </tr> + <tr> + <td>98</td> + <td>858</td> + <td>DBA/2J</td> + <td>M</td> + <td>78</td> + <td>9.9</td> + </tr> + <tr> + <td>99</td> + <td>859</td> + <td>C57BL/6J</td> + <td>F</td> + <td>78</td> + <td>10</td> + </tr> + <tr> + <td>100</td> + <td>860</td> + <td>C57BL/6J</td> + <td>F</td> + <td>78</td> + <td>10</td> + </tr> + <tr> + <td>101</td> + <td>861</td> + <td>C57BL/6J</td> + <td>M</td> + <td>78</td> + <td>10</td> + </tr> + <tr> + <td>102</td> + <td>862</td> + <td>C57BL/6J</td> + <td>M</td> + <td>78</td> + <td>9.6</td> + </tr> + <tr> + <td>103</td> + <td>EGE10907-0172_890_20844</td> + <td>BXD28</td> + <td>M</td> + <td>75</td> + <td>10</td> + </tr> + <tr> + <td>104</td> + <td>EGE10907-0173_891_20845</td> + <td>BXD28</td> + <td>M</td> + <td>75</td> + <td>9.7</td> + </tr> + <tr> + <td>105</td> + <td>EGE10907-0174_892_20846</td> + <td>BXD28</td> + <td>F</td> + <td>75</td> + <td>9.7</td> + </tr> + <tr> + <td>106</td> + <td>EGE10907-0176_895_20848</td> + <td>BXD33</td> + <td>M</td> + <td>75</td> + <td>9.88</td> + </tr> + <tr> + <td>107</td> + <td>EGE10907-0177_896_20849</td> + <td>BXD33</td> + <td>F</td> + <td>75</td> + <td>10</td> + </tr> + <tr> + <td>108</td> + <td>EGE10907-0178_897_20850</td> + <td>BXD33</td> + <td>F</td> + <td>75</td> + <td>9.4</td> + </tr> + <tr> + <td>109</td> + <td>EGE10907-0179_898_20851</td> + <td>BXD36</td> + <td>M</td> + <td>75</td> + 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+ <td>BXD6</td> + <td>F</td> + <td>66</td> + <td>9.4</td> + </tr> + <tr> + <td>192</td> + <td>EGE10907-0263_21932</td> + <td>BXD14</td> + <td>F</td> + <td>69</td> + <td>8.5</td> + </tr> + <tr> + <td>193</td> + <td>EGE10907-0264_21933</td> + <td>BXD34</td> + <td>M</td> + <td>79</td> + <td>9.1</td> + </tr> + <tr> + <td>194</td> + <td>EGE10907-0265_21934</td> + <td>BXD34</td> + <td>M</td> + <td>79</td> + <td>9.9</td> + </tr> + <tr> + <td>195</td> + <td>EGE10907-0266_21935</td> + <td>BXD40</td> + <td>F</td> + <td>75</td> + <td>9.6</td> + </tr> + <tr> + <td>196</td> + <td>EGE10907-0267_21936</td> + <td>BXD40</td> + <td>M</td> + <td>78</td> + <td>9.7</td> + </tr> + <tr> + <td>197</td> + <td>EGE10907-0268_21937</td> + <td>BXD56</td> + <td>F</td> + <td>72</td> + <td>9.7</td> + </tr> + <tr> + <td>198</td> + <td>EGE10907-0269_21938</td> + <td>BXD56</td> + <td>F</td> + <td>72</td> + <td>9.7</td> + </tr> + <tr> + <td>199</td> + <td>EGE10907-0270_21939</td> + <td>BXD56</td> + <td>M</td> + <td>72</td> + <td>9.6</td> + </tr> + <tr> + <td>200</td> + <td>EGE10907-0271_21940</td> + <td>BXD56</td> + <td>M</td> + <td>72</td> + <td>9.4</td> + </tr> + <tr> + <td>201</td> + <td>EGE10907-0272_21941</td> + <td>BXD71</td> + <td>F</td> + <td>72</td> + <td>9.9</td> + </tr> + <tr> + <td>202</td> + <td>EGE10907-0273_21942</td> + <td>BXD71</td> + <td>F</td> + <td>75</td> + <td>9.4</td> + </tr> + <tr> + <td>203</td> + <td>EGE10907-0274_21943</td> + <td>BXD71</td> + <td>M</td> + <td>75</td> + <td>10</td> + </tr> + <tr> + <td>204</td> + <td>EGE10907-0275_21944</td> + <td>BXD71</td> + <td>M</td> + <td>75</td> + <td>10</td> + </tr> + <tr> + <td>205</td> + <td>EGE10907-0276_21945</td> + <td>BXD27</td> + <td>M</td> + <td>65</td> + <td>10</td> + </tr> + <tr> + <td>206</td> + <td>EGE10907-0277_21946</td> + <td>BXD15</td> + <td>M</td> + <td>65</td> + <td>10</td> + </tr> + <tr> + <td>207</td> + <td>EGE10907-0278_21947</td> + <td>BXD20</td> + <td>F</td> + <td>125</td> + <td>10</td> + </tr> + <tr> + <td>208</td> + <td>EGE10907-0279_21948</td> + <td>BXD29</td> + <td>F</td> + <td>77</td> + <td>10</td> + </tr> + <tr> + <td>209</td> + <td>EGE10907-0280_21949</td> + <td>BXD29</td> + <td>F</td> + <td>77</td> + <td>10</td> + </tr> + <tr> + <td>210</td> + <td>EGE10907-0281_21950</td> + <td>BXD34</td> + <td>F</td> + <td>74</td> + <td>10</td> + </tr> + <tr> + <td>211</td> + <td>EGE10907-0282_21951</td> + <td>BXD34</td> + <td>F</td> + <td>74</td> + <td>10</td> + </tr> + <tr> + <td>212</td> + <td>EGE10907-0283_21952</td> + <td>BXD85</td> + <td>F</td> + <td>87</td> + <td>10</td> + </tr> + <tr> + <td>213</td> + <td>EGE10907-0284_21451</td> + <td>BXD43</td> + <td>M</td> + <td>75</td> + <td>9.8</td> + </tr> + </tbody> + </table> + </td> + </tr> + </tbody> +</table> +</blockquote> |