diff options
| author | Bonface | 2024-02-09 09:41:28 -0600 |
|---|---|---|
| committer | Munyoki Kilyungi | 2024-08-09 13:30:43 +0300 |
| commit | d029d5d7f8ead1f1de8d318045004a4a6f68f5fb (patch) | |
| tree | 33c7ff40e3f953d030ed08f468f7afb1dfcba9e6 /general/datasets/JAX_D2GM_RSeq_log2Z_0418 | |
| parent | 769ff7825f5d8d36d541e90534c07f1985899973 (diff) | |
| download | gn-docs-d029d5d7f8ead1f1de8d318045004a4a6f68f5fb.tar.gz | |
Update dataset RTF Files.
Diffstat (limited to 'general/datasets/JAX_D2GM_RSeq_log2Z_0418')
4 files changed, 6 insertions, 0 deletions
diff --git a/general/datasets/JAX_D2GM_RSeq_log2Z_0418/experiment-design.rtf b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/experiment-design.rtf new file mode 100644 index 0000000..5b2f4c9 --- /dev/null +++ b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/experiment-design.rtf @@ -0,0 +1 @@ +<p>Retinal ganglion cell mRNA from 4 month (young) and 9 month (pre-glaucomatous) DBA/2J mice and age and sex-matched D2-Gpnmb+ controls</p>
diff --git a/general/datasets/JAX_D2GM_RSeq_log2Z_0418/platform.rtf b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/platform.rtf new file mode 100644 index 0000000..c967d36 --- /dev/null +++ b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/platform.rtf @@ -0,0 +1 @@ +<p><a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL17021">GPL17021</a>Illumina HiSeq 2500 (Mus musculus)</p>
diff --git a/general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf new file mode 100644 index 0000000..f57a155 --- /dev/null +++ b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/specifics.rtf @@ -0,0 +1,3 @@ +<p>RNA-Seq log2 Z-Score</p>
+
+<p>In general, the array data that we put in GeneNetwork has been logged and then z normalized, but instead of leaving the mean at 0 and the standard deviation of 1 unit, we shift up to a mean of 8 units and increase the spread by having an standard deviation of 2 units (what we call 2Z + 8 normalized data). This removes negative values from the tables.</p>
diff --git a/general/datasets/JAX_D2GM_RSeq_log2Z_0418/summary.rtf b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/summary.rtf new file mode 100644 index 0000000..1cf2292 --- /dev/null +++ b/general/datasets/JAX_D2GM_RSeq_log2Z_0418/summary.rtf @@ -0,0 +1 @@ +<p>RNA-seq analysis from young and pre-glaucomatous DBA/2J retinal ganglion cells and control (age and sex-matched, D2-Gpnmb+) retinal ganglion cells</p>
|