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authorBonface2024-02-15 06:09:54 -0600
committerMunyoki Kilyungi2024-08-09 13:30:43 +0300
commite34e7da50fc0ff5ed41e8bdaf2b1d41c9e9cf534 (patch)
tree67c6bdeb413af7d1dd6c4d02f37b206850a78531 /general/datasets/HC_M2_0606_R/experiment-design.rtf
parentb2feda451ccfbeaed02dce9088d6dd228cf15861 (diff)
downloadgn-docs-e34e7da50fc0ff5ed41e8bdaf2b1d41c9e9cf534.tar.gz
Update dataset RTF Files.
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-<p>Pooled RNA samples (usually one pool of male hippocampii and one pool of female hippocampii) were prepared using standard protocols. Samples were processed using a total of 206 Affymetrix GeneChip Mouse Expression 430 2.0 short oligomer arrays (MOE430 2.0 or M430v2; see GEO platform ID <a class="normalsize" href="http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL1261" target="_empty">GPL1261</a>), of which 201 passed quality control and error checking. This particular data set was processed using the <a class="normalsize" href="http://odin.mdacc.tmc.edu/~zhangli/PerfectMatch/" target="_blank">PDNN</a> protocol. To simplify comparisons among transforms, PDNN values of each array were adjusted to an average of 8 units and a standard deviation of 2 units.</p>