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authorBonface2024-02-15 06:09:54 -0600
committerMunyoki Kilyungi2024-08-09 13:30:43 +0300
commite34e7da50fc0ff5ed41e8bdaf2b1d41c9e9cf534 (patch)
tree67c6bdeb413af7d1dd6c4d02f37b206850a78531 /general/datasets/EYE_M2_1105_M/notes.rtf
parentb2feda451ccfbeaed02dce9088d6dd228cf15861 (diff)
downloadgn-docs-e34e7da50fc0ff5ed41e8bdaf2b1d41c9e9cf534.tar.gz
Update dataset RTF Files.
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-<blockquote>
-<p>CAUTION: DO NOT USE THE PDNN TRANSFORM of the HEIMED EYE Database. USE RMA INSTEAD. This April 2005 data freeze provides estimates of mRNA expression in adult eye from 50 lines of mice including C57BL/6J, DBA/2J, their F1 hybrids, and 47 BXD recombinant inbred strains. Data were generated at UTHSC. Samples were hybridized in small pools (<em>n</em> = 3) to Affymetrix M430 2.0 arrays. This particular data set was processed using the <a class="fs14" href="http://odin.mdacc.tmc.edu/~zhangli/PerfectMatch/" target="_blank">PDNN</a> method of Zhang. To simplify comparison among transforms, PDNN values of each array were adjusted to an average of 8 units and a standard deviation of 2 units.</p>
-</blockquote>
-
-<blockquote>
-<p>This text file originally generated by RWW, Nov 4, 2005. Updated by RWW, Nov 5, 2005. Modified Nov 7 with help of Y. Jiao.</p>
-</blockquote>