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authorBonface2024-02-13 23:52:26 -0600
committerMunyoki Kilyungi2024-08-09 13:30:43 +0300
commitb2feda451ccfbeaed02dce9088d6dd228cf15861 (patch)
tree3dd2883524985114070a7770cd2e9f9bd7eb1848 /general/datasets/Cubr_rna_0219
parentd029d5d7f8ead1f1de8d318045004a4a6f68f5fb (diff)
downloadgn-docs-b2feda451ccfbeaed02dce9088d6dd228cf15861.tar.gz
Update dataset RTF Files.
Diffstat (limited to 'general/datasets/Cubr_rna_0219')
-rw-r--r--general/datasets/Cubr_rna_0219/citation.rtf5
-rw-r--r--general/datasets/Cubr_rna_0219/contributors.rtf1
-rw-r--r--general/datasets/Cubr_rna_0219/experiment-design.rtf1
-rw-r--r--general/datasets/Cubr_rna_0219/notes.rtf1
-rw-r--r--general/datasets/Cubr_rna_0219/specifics.rtf1
-rw-r--r--general/datasets/Cubr_rna_0219/summary.rtf1
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diff --git a/general/datasets/Cubr_rna_0219/citation.rtf b/general/datasets/Cubr_rna_0219/citation.rtf
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+<ul>
+ <li>Rudra P, Shi WJ, Russell P, Vestal B et al.&nbsp;Predictive modeling of miRNA-mediated predisposition to alcohol-related phenotypes in mouse.&nbsp;BMC Genomics&nbsp;2018 Aug 29;19(1):639. PMID:&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/30157779" title="Link to PubMed record">30157779</a></li>
+ <li>Russell PH, Vestal B, Shi W, Rudra PD et al.&nbsp;miR-MaGiC improves quantification accuracy for small RNA-seq.&nbsp;BMC Res Notes&nbsp;2018 May 15;11(1):296. PMID:&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/29764489" title="Link to PubMed record">29764489</a></li>
+ <li>Rudra P, Shi WJ, Vestal B, Russell PH et al.&nbsp;Model based heritability scores for high-throughput sequencing data.&nbsp;BMC Bioinformatics&nbsp;2017 Mar 2;18(1):143. PMID:&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/28253840" title="Link to PubMed record">28253840</a></li>
+</ul>
diff --git a/general/datasets/Cubr_rna_0219/contributors.rtf b/general/datasets/Cubr_rna_0219/contributors.rtf
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+<p><a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=Kechris%20K[Author]">Kechris K</a>,&nbsp;<a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=Tabakoff%20B[Author]">Tabakoff B</a></p>
diff --git a/general/datasets/Cubr_rna_0219/experiment-design.rtf b/general/datasets/Cubr_rna_0219/experiment-design.rtf
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+<p>This dataset includes small RNA NGS sequencing data from 59 strains from the Inbred Long Sleep (ILS) and Inbred Short Sleep (ISS) Recombinant inbred mouse whole brain RNA samples. 175 mice (2-3 from each strain) were untreated (naive). The naive samples were provided by Boris Tabakoff, University of Colorado Anschutz Medical Campus. All expression data generation and analysis were conducted by the Kechris Group, University of Colorado Anschutz Medical Campus.</p>
diff --git a/general/datasets/Cubr_rna_0219/notes.rtf b/general/datasets/Cubr_rna_0219/notes.rtf
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+<p>miRNA expression variance stabilized</p>
diff --git a/general/datasets/Cubr_rna_0219/specifics.rtf b/general/datasets/Cubr_rna_0219/specifics.rtf
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+based on ens_mirna_expression_variance_stabilized \ No newline at end of file
diff --git a/general/datasets/Cubr_rna_0219/summary.rtf b/general/datasets/Cubr_rna_0219/summary.rtf
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+<p>We conducted a high-throughput sequencing study to measure whole brain miRNA expression levels in alcohol na&iuml;ve animals in the LXS panel of recombinant inbred (RI) mouse strains. We then combined the sequencing data with genotype data, microarray gene expression data, and data on alcohol-related behavioral phenotypes such as &#39;Drinking in the dark&#39;, &#39;Sleep time&#39;, and &#39;Low dose activation&#39; from the same RI panel.</p>