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authorBonface2024-02-09 09:41:28 -0600
committerMunyoki Kilyungi2024-08-09 13:30:43 +0300
commitd029d5d7f8ead1f1de8d318045004a4a6f68f5fb (patch)
tree33c7ff40e3f953d030ed08f468f7afb1dfcba9e6 /general/datasets/CUBr_rna_0219
parent769ff7825f5d8d36d541e90534c07f1985899973 (diff)
downloadgn-docs-d029d5d7f8ead1f1de8d318045004a4a6f68f5fb.tar.gz
Update dataset RTF Files.
Diffstat (limited to 'general/datasets/CUBr_rna_0219')
-rw-r--r--general/datasets/CUBr_rna_0219/experiment-design.rtf1
-rw-r--r--general/datasets/CUBr_rna_0219/notes.rtf1
-rw-r--r--general/datasets/CUBr_rna_0219/specifics.rtf1
-rw-r--r--general/datasets/CUBr_rna_0219/summary.rtf1
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diff --git a/general/datasets/CUBr_rna_0219/experiment-design.rtf b/general/datasets/CUBr_rna_0219/experiment-design.rtf
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+<p>This dataset includes small RNA NGS sequencing data from 59 strains from the Inbred Long Sleep (ILS) and Inbred Short Sleep (ISS) Recombinant inbred mouse whole brain RNA samples. 175 mice (2-3 from each strain) were untreated (naive). The naive samples were provided by Boris Tabakoff, University of Colorado Anschutz Medical Campus. All expression data generation and analysis were conducted by the Kechris Group, University of Colorado Anschutz Medical Campus.</p>
diff --git a/general/datasets/CUBr_rna_0219/notes.rtf b/general/datasets/CUBr_rna_0219/notes.rtf
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+<p>miRNA expression variance stabilized</p>
diff --git a/general/datasets/CUBr_rna_0219/specifics.rtf b/general/datasets/CUBr_rna_0219/specifics.rtf
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+based on ens_mirna_expression_variance_stabilized \ No newline at end of file
diff --git a/general/datasets/CUBr_rna_0219/summary.rtf b/general/datasets/CUBr_rna_0219/summary.rtf
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+<p>We conducted a high-throughput sequencing study to measure whole brain miRNA expression levels in alcohol na&iuml;ve animals in the LXS panel of recombinant inbred (RI) mouse strains. We then combined the sequencing data with genotype data, microarray gene expression data, and data on alcohol-related behavioral phenotypes such as &#39;Drinking in the dark&#39;, &#39;Sleep time&#39;, and &#39;Low dose activation&#39; from the same RI panel.</p>