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authorMunyoki Kilyungi2023-10-25 13:13:14 +0300
committerMunyoki Kilyungi2023-10-25 13:13:14 +0300
commit6e4e5c84cc8d2a4eaa60096e02172ad4f06fd22d (patch)
treeec92757311e012964db57450b6ec1b55a4455c2d /api
parent11b331f0a22988cd252f023c973342e261444829 (diff)
downloadgn-docs-6e4e5c84cc8d2a4eaa60096e02172ad4f06fd22d.tar.gz
Update GN3 API documentation.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'api')
-rw-r--r--api/GN3-REST-API-Implementation.md74
1 files changed, 74 insertions, 0 deletions
diff --git a/api/GN3-REST-API-Implementation.md b/api/GN3-REST-API-Implementation.md
index 140037a..feba1ff 100644
--- a/api/GN3-REST-API-Implementation.md
+++ b/api/GN3-REST-API-Implementation.md
@@ -972,3 +972,77 @@ Example Result:
"type": "gnc:GNWikiEntry"
}
```
+## GET /metadata/probesets/:name
+
+Get probeset metadat given it's name
+
+```
+curl "localhost:8080/api/metadata/probesets/1436869_at"
+```
+
+Expected Result:
+
+```
+{
+ "@context": {
+ "alias": "skos:altLabel",
+ "blatMbEnd": "gnt:hasBlatMbEnd",
+ "blatMbEnd2016": "gnt:hasBlatMbEnd2016",
+ "blatMbStart": "gnt:hasBlatMbStart",
+ "blatMbStart2016": "gnt:hasBlatMbStart2016",
+ "blatScore": "gnt:hasBlatScore",
+ "blatSeq": "gnt:hasBlatSeq",
+ "chebi": "gnt:hasChebiId",
+ "chip": "gnt:hasChip",
+ "chr": "gnt:chr",
+ "data": "@graph",
+ "dct": "http://purl.org/dc/terms/",
+ "description": "dct:description",
+ "gnt": "http://genenetwork.org/term/",
+ "homologene": "gnt:hasHomologeneId",
+ "id": "@id",
+ "kegg": "gnt:hasKeggId",
+ "mb": "gnt:mb",
+ "mb2016": "gnt:mb2016",
+ "mbMm8": "gnt:mbMm8",
+ "name": "rdfs:label",
+ "omim": "gnt:hasOmimId",
+ "pubchem": "gnt:hasPubChemId",
+ "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#",
+ "rdfs": "http://www.w3.org/2000/01/rdf-schema#",
+ "skos": "http://www.w3.org/2004/02/skos/core#",
+ "specificity": "gnt:hasSpecificity",
+ "symbol": "gnt:symbol",
+ "targetId": "gnt:hasTargetId",
+ "targetSeq": "gnt:hasTargetSeq",
+ "targetsRegion": "gnt:targetsRegion",
+ "type": "@type",
+ "uniprot": "gnt:hasUniprotId"
+ },
+ "alias": "HHG1; HLP3; HPE3; SMMCI; Dsh; Hhg1",
+ "blatMbEnd": 28.4573,
+ "blatMbEnd2016": 28.7837,
+ "blatMbStart": 28.4572,
+ "blatMbStart2016": 28.7837,
+ "blatScore": "72",
+ "blatSeq": "CATGGGGGTCCACAAATTATATTTTAATTTAACTATTTTCCAATGTAATAGCCGTCTTCTGTACTGCCTTCTT",
+ "chip": "Affy Mouse Genome 430 2.0 (GPL1261)",
+ "chr": "5",
+ "description": "sonic hedgehog hedgehog",
+ "homologene": {
+ "id": "https://bio2rdf.org/homologene:30961"
+ },
+ "id": "http://genenetwork.org/id/probeset1436869_at",
+ "mb": 28.4572,
+ "mb2016": 28.7837,
+ "mbMm8": 28.7879,
+ "name": "1436869_at",
+ "omim": {
+ "id": "https://www.omim.org/entry/600725"
+ },
+ "specificity": "3.6",
+ "symbol": "Shh",
+ "targetSeq": "catgggggtccacaaattatatttttatacacagaattgtanattanatttttgagagatcaatacctaantgaatgacatttcattttttgaaagtgtaaaatatgnaaatatattattttaatttaactattttccaatgtaatagccgtcttctgtactgccttctt",
+ "type": "http://genenetwork.org/category/Probeset"
+}
+```