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| author | Pjotr Prins | 2023-08-20 11:37:51 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2023-08-20 11:37:51 +0200 |
| commit | 21c08038536397c0f4694510e13cb8801e372514 (patch) | |
| tree | 429b73a146cceaaa6d40a98eac5e05679f61c9a8 /api | |
| parent | a7c9ea3394cc8604e8ac2baeb927d50b701f2606 (diff) | |
| download | gn-docs-21c08038536397c0f4694510e13cb8801e372514.tar.gz | |
SPARQL markdown highlight
Diffstat (limited to 'api')
| -rw-r--r-- | api/sparql-endpoint.md | 20 |
1 files changed, 10 insertions, 10 deletions
diff --git a/api/sparql-endpoint.md b/api/sparql-endpoint.md index 0b04c6b..b022a08 100644 --- a/api/sparql-endpoint.md +++ b/api/sparql-endpoint.md @@ -50,7 +50,7 @@ SPARQL examples are: And list all 50+ sets for Mouse: -```sql +```sparql SELECT DISTINCT * WHERE { ?inbredSet rdf:type gnc:inbredSet ; gnt:belongsToSpecies gn:Mus_musculus . @@ -64,7 +64,7 @@ And list all 50+ sets for Mouse: - list_datasets("BXD") - List available datasets for a given group (here, "BXD"). -``` +```sparql SELECT DISTINCT * WHERE { ?dataset gnt:belongsToInbredSet gn:inbredSetBxd ; rdfs:label ?descr . @@ -75,7 +75,7 @@ SELECT DISTINCT * WHERE { Pick one, e.g. http://genenetwork.org/id/Devneocortex_ilm6_2p14rinv_1111 or `gn:Devneocortex_ilm6_2p14rinv_1111` -``` +```sparql SELECT DISTINCT * WHERE { gn:Devneocortex_ilm6_2p14rinv_1111 ?p ?o . } @@ -83,7 +83,7 @@ SELECT DISTINCT * WHERE { Will show something like: -``` +```sparql http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://genenetwork.org/category/probesetDataset http://purl.org/dc/terms/created "2011-11-18" http://www.w3.org/2004/02/skos/core#prefLabel "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10)" @@ -95,7 +95,7 @@ http://vocab.fairdatacollective.org/gdmt/hasCreatorAffiliation "Beth Israel Dea Another way to list datasets with the name that is used in GN: -``` +```sparql SELECT DISTINCT ?dataset ?datasetName WHERE { ?dataset rdf:type/rdfs:subClassOf gnc:dataset . ?dataset rdfs:label ?datasetName . @@ -106,7 +106,7 @@ Another way to list datasets with the name that is used in GN: To list all datasets -``` +```sparql SELECT DISTINCT ?dataset ?datasetName WHERE { ?dataset rdf:type/rdfs:subClassOf gnc:dataset . ?dataset rdfs:label ?datasetName . @@ -116,7 +116,7 @@ To list all datasets And count them! -``` +```sparql SELECT count(?dataset) WHERE { ?dataset rdf:type/rdfs:subClassOf gnc:dataset . } @@ -126,7 +126,7 @@ And count them! - info_dataset("CB_M_1004_P") - Get meta information about a data set using the GN name: -``` +```sparql SELECT DISTINCT * WHERE { ?s rdfs:label "CB_M_1004_P" . ?s ?p ?o . @@ -137,7 +137,7 @@ And count them! - info_datasets("B6D2F2") - Get meta information about all data sets for a group. -``` +```sparql SELECT DISTINCT * WHERE { ?s rdf:type/rdfs:subClassOf gnc:dataset . ?s gnt:belongsToInbredSet ?inbredSet . @@ -147,7 +147,7 @@ And count them! ``` - info_pheno("BXD", "10038") - Get summary information for a phenotype -``` +```sparql SELECT DISTINCT * WHERE { ?s rdf:type gnc:phenotype . ?inbredSet skos:altLabel "BXD" . |