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authorPjotr Prins2023-08-20 11:37:51 +0200
committerPjotr Prins2023-08-20 11:37:51 +0200
commit21c08038536397c0f4694510e13cb8801e372514 (patch)
tree429b73a146cceaaa6d40a98eac5e05679f61c9a8 /api
parenta7c9ea3394cc8604e8ac2baeb927d50b701f2606 (diff)
downloadgn-docs-21c08038536397c0f4694510e13cb8801e372514.tar.gz
SPARQL markdown highlight
Diffstat (limited to 'api')
-rw-r--r--api/sparql-endpoint.md20
1 files changed, 10 insertions, 10 deletions
diff --git a/api/sparql-endpoint.md b/api/sparql-endpoint.md
index 0b04c6b..b022a08 100644
--- a/api/sparql-endpoint.md
+++ b/api/sparql-endpoint.md
@@ -50,7 +50,7 @@ SPARQL examples are:
And list all 50+ sets for Mouse:
-```sql
+```sparql
SELECT DISTINCT * WHERE {
?inbredSet rdf:type gnc:inbredSet ;
gnt:belongsToSpecies gn:Mus_musculus .
@@ -64,7 +64,7 @@ And list all 50+ sets for Mouse:
- list_datasets("BXD") - List available datasets for a given group (here, "BXD").
-```
+```sparql
SELECT DISTINCT * WHERE {
?dataset gnt:belongsToInbredSet gn:inbredSetBxd ;
rdfs:label ?descr .
@@ -75,7 +75,7 @@ SELECT DISTINCT * WHERE {
Pick one, e.g. http://genenetwork.org/id/Devneocortex_ilm6_2p14rinv_1111 or `gn:Devneocortex_ilm6_2p14rinv_1111`
-```
+```sparql
SELECT DISTINCT * WHERE {
gn:Devneocortex_ilm6_2p14rinv_1111 ?p ?o .
}
@@ -83,7 +83,7 @@ SELECT DISTINCT * WHERE {
Will show something like:
-```
+```sparql
http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://genenetwork.org/category/probesetDataset
http://purl.org/dc/terms/created "2011-11-18"
http://www.w3.org/2004/02/skos/core#prefLabel "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10)"
@@ -95,7 +95,7 @@ http://vocab.fairdatacollective.org/gdmt/hasCreatorAffiliation "Beth Israel Dea
Another way to list datasets with the name that is used in GN:
-```
+```sparql
SELECT DISTINCT ?dataset ?datasetName WHERE {
?dataset rdf:type/rdfs:subClassOf gnc:dataset .
?dataset rdfs:label ?datasetName .
@@ -106,7 +106,7 @@ Another way to list datasets with the name that is used in GN:
To list all datasets
-```
+```sparql
SELECT DISTINCT ?dataset ?datasetName WHERE {
?dataset rdf:type/rdfs:subClassOf gnc:dataset .
?dataset rdfs:label ?datasetName .
@@ -116,7 +116,7 @@ To list all datasets
And count them!
-```
+```sparql
SELECT count(?dataset) WHERE {
?dataset rdf:type/rdfs:subClassOf gnc:dataset .
}
@@ -126,7 +126,7 @@ And count them!
- info_dataset("CB_M_1004_P") - Get meta information about a data set using the GN name:
-```
+```sparql
SELECT DISTINCT * WHERE {
?s rdfs:label "CB_M_1004_P" .
?s ?p ?o .
@@ -137,7 +137,7 @@ And count them!
- info_datasets("B6D2F2") - Get meta information about all data sets for a group.
-```
+```sparql
SELECT DISTINCT * WHERE {
?s rdf:type/rdfs:subClassOf gnc:dataset .
?s gnt:belongsToInbredSet ?inbredSet .
@@ -147,7 +147,7 @@ And count them!
```
- info_pheno("BXD", "10038") - Get summary information for a phenotype
-```
+```sparql
SELECT DISTINCT * WHERE {
?s rdf:type gnc:phenotype .
?inbredSet skos:altLabel "BXD" .