blob: c3669e673cb262034e807ade0978c6617e41005a (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
|
"""Views for InbredSet resources."""
from flask import jsonify, Response, Blueprint
from gn_auth.auth.db import sqlite3 as db
from gn_auth.auth.db.sqlite3 import with_db_connection
from gn_auth.auth.authentication.oauth2.resource_server import require_oauth
iset = Blueprint("inbredset", __name__)
@iset.route("/resource-id/<int:speciesid>/<int:inbredsetid>")
def resource_id_by_inbredset_id(speciesid: int, inbredsetid: int) -> Response:
"""Retrieve the resource ID for resource attached to the inbredset."""
def __res_by_iset_id__(conn):
with db.cursor(conn) as cursor:
cursor.execute(
"SELECT r.resource_id FROM linked_inbredset_groups AS lisg "
"INNER JOIN inbredset_group_resources AS isgr "
"ON lisg.data_link_id=isgr.data_link_id "
"INNER JOIN resources AS r ON isgr.resource_id=r.resource_id "
"WHERE lisg.SpeciesId=? AND lisg.InbredSetId=?",
(speciesid, inbredsetid))
return cursor.fetchone()
res = with_db_connection(__res_by_iset_id__)
if res:
resp = jsonify({"status": "success", "resource-id": res["resource_id"]})
else:
resp = jsonify({
"status": "not-found",
"error_description": (
"Could not find resource handling InbredSet group with ID "
f"'{inbredsetid}' that belongs to Species with ID "
f"'{speciesid}'")
})
resp.status_code = 404
return resp
|
