| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 9 days | Fix some linting issues. | Frederick Muriuki Muriithi | |
| 9 days | Bugfix: Build up "WHERE" clauses correctly | Frederick Muriuki Muriithi | |
| Have the email and name checked with "OR" where both are present. | |||
| 9 days | Provide missing symbol. | Frederick Muriuki Muriithi | |
| 9 days | Bugfix: Set the correct value. | Frederick Muriuki Muriithi | |
| 2025-06-25 | Delete system users. | Frederick Muriuki Muriithi | |
| 2025-06-24 | Search in names too. Fix query params. | Frederick Muriuki Muriithi | |
| 2025-06-24 | Enable filtering of data, and limiting length. | Frederick Muriuki Muriithi | |
| 2025-06-11 | Fix code issue caught by type-checker. | Frederick Muriuki Muriithi | |
| 2025-06-11 | Fix code issues caught by the linter. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Add inbredset-group resource type in unlinked_data function | zsloan | |
| This still needs to be implemented, but this commit prevents the key error | |||
| 2025-06-09 | Enable linking multiple data items to a resource in single request. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Use more flexible check for authorisation. | Frederick Muriuki Muriithi | |
| Use the more flexible check for authorisation that a user has on a specific resource. | |||
| 2025-06-09 | Add function to fetch the wrapper resource for a specific group. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Add a function to fetch the system resource. | Frederick Muriuki Muriithi | |
| 2025-06-09 | Check for a user's privileges on a particular resource. | Frederick Muriuki Muriithi | |
| Add a general function to check that a particular user has certain privileges on a particular resource. | |||
| 2025-06-09 | Allow linking of data by passing the raw ids too. | Frederick Muriuki Muriithi | |
| 2025-05-06 | Fix failing mypy. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-05-05 | Fix "C0301: Line too long" pylint error. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-28 | Handle error raised in the case the request is not JSON | Frederick Muriuki Muriithi | |
| 2025-03-28 | Simplify line where it was unnecessarily checking request.json twice | zsloan | |
| 2025-03-14 | Add missing fix: Make display of minutes more human-friendly. | Frederick Muriuki Muriithi | |
| 2025-03-14 | Make display of number of minutes more human-friendly. | Frederick Muriuki Muriithi | |
| 2025-03-14 | Move expiry of auth-based emails into a config variable. | Frederick Muriuki Muriithi | |
| To ease setting up of value without changing code, move the value out into a configuration variable. | |||
| 2025-02-26 | Fix pylint errors. | Frederick Muriuki Muriithi | |
| 2025-02-26 | Remove use of obsolete flask_helpers module. | Frederick Muriuki Muriithi | |
| Create the requests in the class, as appropriate, checking for content-type. | |||
| 2025-02-17 | Use default sys-admin group if user is not a member of any group. | Frederick Muriuki Muriithi | |
| Instead of failing, assign any population resource to the default system admin group, if the user is not a member of any group. | |||
| 2025-02-17 | Provide a way to fetch a system-administrator's group. | Frederick Muriuki Muriithi | |
| 2025-01-10 | Update server to support non-expiring JWTs. | Frederick Muriuki Muriithi | |
| 2025-01-10 | Override `generate` to generate tokens without expiry. | Frederick Muriuki Muriithi | |
| 2025-01-10 | Rework `get_token_data()` to only set 'exp' if its provided. | Frederick Muriuki Muriithi | |
| 2025-01-10 | Allow for non-expiring JWT tokens. | Frederick Muriuki Muriithi | |
| 2024-12-31 | Log out exceptions with the application's logger | Frederick Muriuki Muriithi | |
| 2024-12-31 | Allow the request to redirect from HTTP to HTTPS where relevant. | Frederick Muriuki Muriithi | |
| 2024-12-31 | DEBUG: See the Public JWKS uri. | Frederick Muriuki Muriithi | |
| 2024-11-22 | Delete local mariadb connections module. | Frederick Muriuki Muriithi | |
| We no longer need this module after moving the code to use gn-libs. | |||
| 2024-11-22 | Use code in gn_libs for MySQL/MariaDB connection. | Frederick Muriuki Muriithi | |
| Update the application to use the gn_libs code for connecting to the database, rather than using a local module. | |||
| 2024-11-08 | Revert "Debug: Add debug logging to trace JWK fetching." | Frederick Muriuki Muriithi | |
| This reverts commit 5a6dc1fb81bf223750f42f4697f3cd7d86b39e71. Remove debugging statements and restore original code. | |||
| 2024-11-05 | Debug: Add debug logging to trace JWK fetching. | Frederick Muriuki Muriithi | |
| 2024-11-04 | Output KeySet retrieved from the client. | Frederick Muriuki Muriithi | |
| 2024-10-09 | Linting: Fix minor linting errors | Frederick Muriuki Muriithi | |
| 2024-10-09 | Fix masquerading logic | Frederick Muriuki Muriithi | |
| Update the code to actually use JWT bearer tokens that the older plain authorisation tokens that were previously used. | |||
| 2024-10-09 | Add a client to the JWTBearerToken objects. | Frederick Muriuki Muriithi | |
| 2024-10-09 | Update Configs: Change `OAUTH2_SCOPE` => `OAUTH2_SCOPES_SUPPORTED` | Frederick Muriuki Muriithi | |
| Use the OAUTH2_SCOPES_SUPPORTED application configuration variable, that is used by the flask integration for the Authlib library to set up the supported scopes. | |||
| 2024-10-09 | Pass on all GET parameters when redirecting. | Frederick Muriuki Muriithi | |
| 2024-10-09 | Put routes behind auth. | Frederick Muriuki Muriithi | |
| 2024-10-03 | BugFix: Fetch also roles assigned to user | Frederick Muriuki Muriithi | |
| When fetching the resource roles, fetch also any roles that are assigned to the user for that resource. | |||
| 2024-10-03 | BugFix: Remove duplicates from resources list | Frederick Muriuki Muriithi | |
| Issue: https://issues.genenetwork.org/issues/gn-auth/resources-duplicates-in-resources-list The query was returning multiple instances of the same resource in situations where a user had more than one role of a particular resource. | |||
| 2024-10-03 | Provide a way to change OAuth2 client secrets. | Frederick Muriuki Muriithi | |
| 2024-09-30 | Refactor: Initialise phenotype package | Frederick Muriuki Muriithi | |
| * Move code into a new phenotypes package and update references. * Add new functions to fetch linked resources from GN3 data identifiers — this is useful for auth * Provide endpoint to fetch authorisation details for a specific phenotype. | |||
| 2024-09-30 | Create a better named function, with less data in the args. | Frederick Muriuki Muriithi | |
| The new name serves better to reflect what the function does. We then pass only the data that the function needs to perform its operation rather than full objects with extra data — this has implications for security. | |||
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index : gn-auth | |
| GN authentication and authorization service |
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