| Age | Commit message (Expand) | Author |
|---|
| 2024-11-22 | Use code in gn_libs for MySQL/MariaDB connection....Update the application to use the gn_libs code for connecting to the
database, rather than using a local module.
| Frederick Muriuki Muriithi |
| 2024-10-09 | Put routes behind auth. | Frederick Muriuki Muriithi |
| 2024-10-03 | BugFix: Fetch also roles assigned to user...When fetching the resource roles, fetch also any roles that are
assigned to the user for that resource.
| Frederick Muriuki Muriithi |
| 2024-10-03 | BugFix: Remove duplicates from resources list...Issue:
https://issues.genenetwork.org/issues/gn-auth/resources-duplicates-in-resources-list
The query was returning multiple instances of the same resource in
situations where a user had more than one role of a particular resource.
| Frederick Muriuki Muriithi |
| 2024-09-30 | Refactor: Initialise phenotype package...* Move code into a new phenotypes package and update references.
* Add new functions to fetch linked resources from GN3 data
identifiers — this is useful for auth
* Provide endpoint to fetch authorisation details for a specific
phenotype.
| Frederick Muriuki Muriithi |
| 2024-09-30 | Extract function to prevent circular dependencies. | Frederick Muriuki Muriithi |
| 2024-09-26 | Add type annotation to variable. | Frederick Muriuki Muriithi |
| 2024-09-26 | Bugfix: Fix bugs that were preventing creation of geno resource...Fix the bugs that were causing the creation of a genotype resource via
API to fail.
| Frederick Muriuki Muriithi |
| 2024-09-25 | Implement genotype resource creation via API with resource data...Create the resource, assign the resource-owner role and link the
resource's data in a single API call.
| Frederick Muriuki Muriithi |
| 2024-09-25 | Extract common role assignment to its own module | Frederick Muriuki Muriithi |
| 2024-09-16 | Create population resource and assign appropriate roles...Provide an endpoint to create a new population
resource (inbredset-group) and assign the active user with the
appropriate privileges against the new resource.
| Frederick Muriuki Muriithi |
| 2024-09-16 | Rename blueprint and register it one level lower...Register the populations/inbredset blueprint with the "resources"
blueprint rather than at the higher level "auth" blueprint to retain
the hierarchy of the blueprints and make maintenance arguably easier.
| Frederick Muriuki Muriithi |
| 2024-09-16 | Pass cursor rather than connection to create_resource function...In order to decouple the `create_resource` function from the related
functions that assign roles to users, this commit changes the code to
pass in a cursor rather than a connection.
The cursor will be the same cursor passed into the role assignment
functions ensuring that the resource creation and role assignment
happen in a single transaction.
| Frederick Muriuki Muriithi |
| 2024-09-13 | Notes: Add note on some items that could go into hooks. | Frederick Muriuki Muriithi |
| 2024-08-15 | Fix a bunch of linting errors. | Frederick Muriuki Muriithi |
| 2024-08-15 | fix: bugs in masquerade api | John Nduli |
| 2024-08-05 | Fix linting errors. | Frederick Muriuki Muriithi |
| 2024-08-01 | Handle generic exception and return a value.enable-key-rotation | Frederick Muriuki Muriithi |
| 2024-07-31 | Ignore warning from mypy. | Frederick Muriuki Muriithi |
| 2024-07-31 | Remove obsoleted SSL_PRIVATE_KEY configuration...With the key rotation in place, eliminate the use of the
SSL_PRIVATE_KEY configuration which pointed to a specific non-changing
JWK.
| Frederick Muriuki Muriithi |
| 2024-07-17 | Add non-interactive script to assign make data public by default. | Frederick Muriuki Muriithi |
| 2024-06-25 | Roles: Get rid of use of GroupRole; use Role directly for resources...The GroupRole idea was flawed, and led to a critical bug that would
have allowed privilege escalation. This uses the Role directly acting
on a specific resource when assigning said role to a user.
| Frederick Muriuki Muriithi |
| 2024-06-20 | Reorganise test fixtures. Fix tests and issues caught....Reorganise test fixtures to more closely follow the design of the auth
system.
Fix the broken tests due to refactors and fix all issues caught by the
running tests.
| Frederick Muriuki Muriithi |
| 2024-06-18 | fix mypy errors | Frederick Muriuki Muriithi |
| 2024-06-17 | Fix mypy errors | Frederick Muriuki Muriithi |
| 2024-06-17 | Remove obsolete endpoint. | Frederick Muriuki Muriithi |
| 2024-06-17 | Fix linting errors | Frederick Muriuki Muriithi |
| 2024-06-17 | Remove deprecated endpoint. | Frederick Muriuki Muriithi |
| 2024-06-17 | Retrieve complete list of a users roles on a particular resource. | Frederick Muriuki Muriithi |
| 2024-06-17 | Fix linting errors. | Frederick Muriuki Muriithi |
| 2024-06-17 | Create a resource role. | Frederick Muriuki Muriithi |
| 2024-06-17 | Don't save the resource-owner role as a resource role...The 'resource-owner' role is a system-default role that applies to
most resources, but should not be editable by users. This commit
removes the code that was linking the role with each resource, leading
it to being presented to the user as a editable role.
| Frederick Muriuki Muriithi |
| 2024-06-17 | Use the form's json attribute to retrieve sent data...The system uses JSON as the default communication format, so we use
the form's json attribute to get any data sent.
| Frederick Muriuki Muriithi |
| 2024-06-11 | Fix typo. | Frederick Muriuki Muriithi |
| 2024-06-11 | Temporary fix to retrieve users with read access to resource. | Frederick Muriuki Muriithi |
| 2024-06-11 | List users assigned a particular role on a specific resource.handle-role-privilege-escalation | Frederick Muriuki Muriithi |
| 2024-06-11 | Import the symbols we use in the module directly....Import the modules directly to help with reducing line-length and
unnecessary typing.
| Frederick Muriuki Muriithi |
| 2024-06-11 | Unassign privilege from resource role. | Frederick Muriuki Muriithi |
| 2024-06-10 | Fetch a role by its ID. | Frederick Muriuki Muriithi |
| 2024-06-10 | Use new db resultset conversion functions. | Frederick Muriuki Muriithi |
| 2024-06-10 | Provide resource roles endpoint...Provide an endpoint that returns all the roles that a particular user
has on a specific resource.
| Frederick Muriuki Muriithi |
| 2024-06-10 | Share reusable function | Frederick Muriuki Muriithi |
| 2024-06-07 | Replace `…/group/roles` endpoint with `…/resource/…/roles` endpoint....The `…/group/roles` endpoint relied on the now deleted `group_roles`
table that caused the implementation to be prone to privilege
escalation attacks.
This commit provides the `…/resource/…/roles` endpoint that provides
the required functionality without the exposure.
| Frederick Muriuki Muriithi |
| 2024-06-07 | Update role assignment: user resource_roles table...We no longer use the group_roles table, and have moved to the less
privilege-escalation-prone resource_roles table. This commit updates
the queries to use the newer resource_roles table.
| Frederick Muriuki Muriithi |
| 2024-06-06 | Add deprecation warning to /group-privileges endpoint function. | Frederick Muriuki Muriithi |
| 2024-06-05 | Bug: Point to correct key to avoid errors | Frederick Muriuki Muriithi |
| 2024-06-03 | Move user creation from db resultset into static method...Creation of a User object from the database resultset will mostly be
the same. This commit moves the repetitive code into a static method
that can be called wherever we need it.
This improves maintainability, since we only ever need to do an update
in one place now.
| Frederick Muriuki Muriithi |
| 2024-04-30 | Create a JWT token when querying a user's role an a resource....* gn_auth/auth/authorisation/resources/views.py: Import time.
(get_user_roles_on_resource): Add a JWT bearer token to the
responses's header.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2024-04-24 | Move the errors module up one level to break circular dependencies. | Frederick Muriuki Muriithi |
| 2024-04-23 | pylint: Fix linting errors. | Frederick Muriuki Muriithi |
