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2023-11-17Bug: Update query in scriptFrederick Muriuki Muriithi
Update query in script to provide resource_id for the user_roles tabel.
2023-11-17Add styles.Frederick Muriuki Muriithi
2023-11-17Setup path to static paths correctly.Frederick Muriuki Muriithi
2023-11-13Bug: Fix typo in queryFrederick Muriuki Muriithi
2023-11-13Update check for adminsFrederick Muriuki Muriithi
2023-11-02Config: Use instance_path to load secrets.Frederick Muriuki Muriithi
2023-11-02mypy: Fix typing errors.Frederick Muriuki Muriithi
2023-11-02pylint: Fix linting errors.Frederick Muriuki Muriithi
2023-10-27Use upstream `yoyo-migrations`Frederick Muriuki Muriithi
2023-10-27Configuration: OAUTH2_SCOPE - provide clarificationFrederick Muriuki Muriithi
Adds clarification that the `OAUTH2_SCOPE` setting is provided by default, and so the final settings are only necessary to override that.
2023-10-12migrations: Create role for dealing with inbredset groups.Frederick Muriuki Muriithi
2023-10-12Bugs: Fix query and provide default function for inbredset-groupFrederick Muriuki Muriithi
2023-10-12Assign role to act on InbredSets to admin.Frederick Muriuki Muriithi
2023-10-10Get authorisation by resource_idsFrederick Muriuki Muriithi
Add an endpoint to help users get the resources authorisation by the resource ids.
2023-10-10Temporarily return no data for resources of types system and group.Frederick Muriuki Muriithi
2023-10-09Fetch InbredSet group resource ID by SpeciesId and InbredSetIdFrederick Muriuki Muriithi
Get the resource used to control access to the InbredSet group by that group's SpeciesId and InbredSetId.
2023-10-09scripts: Provide script to link InbredSets to auth system.Frederick Muriuki Muriithi
2023-10-02migrations: New migration - InbredSet ResourcesFrederick Muriuki Muriithi
Provide a new migration to create tables to handle the InbredSet resources. The migration also sets up the resource category and the related privileges.
2023-09-29Make migrations directory a package.Frederick Muriuki Muriithi
2023-09-27Add missing importFrederick Muriuki Muriithi
2023-09-27List all packages to install.Frederick Muriuki Muriithi
2023-09-27Update setup.pyFrederick Muriuki Muriithi
- Update the name and version - Include the whole of gn-auth in the `packages` list - Include any non-python files in the install
2023-09-27Update dependency: Use upstream python-mypyFrederick Muriuki Muriithi
2023-09-27guix-bioinformatics: Update guix channel URLFrederick Muriuki Muriithi
2023-09-27typing: fix and ignore typing issues.Frederick Muriuki Muriithi
2023-09-27linting: Remove unused import, handle unused variableFrederick Muriuki Muriithi
2023-09-27Bug: Fix issue with viewing resources of type "group".Frederick Muriuki Muriithi
2023-09-26Update queryFrederick Muriuki Muriithi
Replace `group_user_roles_on_resources` table with `user_roles` for the query that checks whether the user has appropriate permissions to act on a specific resource.
2023-09-26Handle AuthorisationError at the top-levelFrederick Muriuki Muriithi
Add an error handler to gracefully handle the custom AuthorisationError at the application's top-level to avoid having to manually handle it everywhere that the error (and its sub-classes) might be raised.
2023-09-26Handle temporary edge casesFrederick Muriuki Muriithi
Fetching resource data: system and group categories of resources do not have associated genetic data. This commit adds some code to temporarily handle that case as an edge case before I can devote more time to fixing the issue in a much better way.
2023-09-26Add `public-view` role. Assign it to users.Frederick Muriuki Muriithi
Add a new `public-view` role to be assigned to all users on all resources that are defined as publicly viewable. Update code to make assign `public-view` role to a newly registered user for all publicly viewable roles. Update the code to assign/revoke the `public-view` role to/from users whenever the resource is toggled to and from being publicly viewable. Ensure that `public-view` is not revoked from system-administrators. Ensure that `public-view` is not revoked from the group administrators of the group that owns the resource.
2023-09-26Update fetching a single roleFrederick Muriuki Muriithi
2023-09-26Initialise package to handle resources of type "system".Frederick Muriuki Muriithi
2023-09-26Update /roles endpoint: rework code for new `user_roles` functionFrederick Muriuki Muriithi
The way the `gn_auth.auth.authorisation.roles.models.user_roles` function works has changed: this commit updates the code to take that into consideration and fix any errors.
2023-09-26Add default `REDIS_URI` configuration.Frederick Muriuki Muriithi
2023-09-26Add System resource, and group resource(s) to list of user resourcesFrederick Muriuki Muriithi
* The system resource is public, and should be present for all users. * Each user that is a member of a group, should have their group show up in their list of resources. * Fix the SQL join: add an `ON ...` clause.
2023-09-26Update `user_roles`: Return roles for user by resource.Frederick Muriuki Muriithi
2023-09-26Move `groups` package under `resources` packageFrederick Muriuki Muriithi
With user groups being resources that users can act on (with the recent changes), this commit moves the `groups` module to under the `resources` module. It also renames the `*_resources.py` modules by dropping the `_resources` part since the code is under the `resources` module anyway.
2023-09-26Update tests & fixtures to conform to schema changesFrederick Muriuki Muriithi
2023-09-26Remove group from resource objectsFrederick Muriuki Muriithi
With the new schema, not all Resource objects are "owned" by a group. Those that are, are linked together through a different db table (`resource_ownership`). This commit removes the `Group` object from `Resource` objects and updates the `resource_ownership` where relevant.
2023-09-26Raise exception if no group for `resource_group`Frederick Muriuki Muriithi
Rather than using pymonad's Maybe monad and dealing with the complexity it introduces, raise an exception if there is no group found for the given resource.
2023-09-26Add `resource_group` function to retrieve the owning groupFrederick Muriuki Muriithi
Some resources are "owned" by specific user groups. This commit adds a way to retrieve those "owners" where relevant.
2023-09-26Extract resource-type-specific code into separate modulesFrederick Muriuki Muriithi
For easier maintenance, extract the code that relates to specific resource types/categories into separate modules, each dealing with a single resource type/category.
2023-09-26Extract basic resource types to a separate module.Frederick Muriuki Muriithi
2023-09-26Fix foreign-key refs. Merge tables.Frederick Muriuki Muriithi
* Link the `role_id` field to the `roles` table rather than the `group_roles` table. * Merge the data in the `group_user_roles_on_resources` table in the `user_roles` table to have a single point-of-truth for all user roles on resources.
2023-09-26Add a 'system' resourceFrederick Muriuki Muriithi
Add a 'system' resource to allow users to have roles they can use to act on the system itself.
2023-09-26migrations: Create `group_resources` table.Frederick Muriuki Muriithi
2023-09-26Drop `group_id` from resources tableFrederick Muriuki Muriithi
Drop the `group_id` from the `resources` table and update all dependent tables to fix FOREIGN KEY constraints to ensure integrity of the data.
2023-09-26Add `system` and `group` resource categories.Frederick Muriuki Muriithi
2023-09-26Resources refactor: Add `resource_ownership` tableFrederick Muriuki Muriithi
New table to link resources to groups, where relevant.
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