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2024-08-21Use username and password, when present, during sending emailsFrederick Muriuki Muriithi
If the username and password are provided, make use of them to send emails out.
2024-08-20Save to DB then send emailFrederick Muriuki Muriithi
Separate the saving of the token from its sending.
2024-08-20Handle the "GET" part of the change-password requestFrederick Muriuki Muriithi
- Delete any expired tokens - Display the UI if token is valid, else redirect with error notification.
2024-08-20Pass GET parameters for correct redirection.Frederick Muriuki Muriithi
2024-08-20Add notification to outgoing emails.Frederick Muriuki Muriithi
2024-08-20Fix query: Replace any existing token.Frederick Muriuki Muriithi
2024-08-19Generate token and send out "Forgot Password" emailFrederick Muriuki Muriithi
* Generate token to use for verifying the password-change request * Send out email with token
2024-08-19Show "Forgot Password" link.Frederick Muriuki Muriithi
Provide the user with the "Forgot Password" link, if the backend supports it.
2024-08-19Migrations: Add forgot_password_tokens tableFrederick Muriuki Muriithi
Create the `forgot_password_tokens` table to be used to enable users change their passwords if they forget.
2024-08-15Update running of tests.Frederick Muriuki Muriithi
2024-08-15Fix a bunch of linting errors.Frederick Muriuki Muriithi
2024-08-15Improve the messaging in the UI.Frederick Muriuki Muriithi
2024-08-15Reduce UI complexityFrederick Muriuki Muriithi
Providing both the "Enter Verification Token" and the "Send Verification Email" elements of the same user interface seems to confuse users. This commit ensures that the system will provide one or the other, but not both, depending on whether or not there is a pending verification token present for the user.
2024-08-15Import specific classes from the datetime module.Frederick Muriuki Muriithi
2024-08-15fix: bugs with generating auth tokensJohn Nduli
2024-08-15fix: cast args to strJohn Nduli
2024-08-15fix: bugs in masquerade apiJohn Nduli
2024-08-14fix: import timedelta in jwksJohn Nduli
2024-08-14refactor: move newest_jwk_with_rotation function to jwks.pyJohn Nduli
We have a similar jwk module in gn2 that does similar functionality. Moving the newest_jwk_with_rotation function to the module ensures that there's some consistency between both modules so that when we ever want to remove the duplication (e.g. by creating some python pip package) it's easier.
2024-08-14docs: update documentation to reflect new secrets handlingJohn Nduli
2024-08-13Emails: Make "From" address configurableFrederick Muriuki Muriithi
We are running GeneNetwork in different environments. Each environment could have it's own separate domain, and need a different sender email to allow the underlying services to allow the emails through.
2024-08-08Fix bug with sending e-mailszsloan
We changed the from address from genenetwork.org to uthsc.edu, which seems to have fixed the issue with e-mails not being properly sent. We also stopped activating tls
2024-08-08Bug: Prevent fall-through to verification if code is expired.Frederick Muriuki Muriithi
2024-08-08Get data from form too.Frederick Muriuki Muriithi
2024-08-08Forward email to email verification page.Frederick Muriuki Muriithi
2024-08-07Log out user registration errors at the `ERROR` log-level.Frederick Muriuki Muriithi
2024-08-07Log out exceptions at the `ERROR` log levelFrederick Muriuki Muriithi
Log out any unhandled exceptions at the `ERROR` log level to ensure that any and all unhandled errors show up in the logs under normal running of the application.
2024-08-07Include email text templates.Frederick Muriuki Muriithi
2024-08-05Fix linting errors.Frederick Muriuki Muriithi
2024-08-02docs: update documentation to include wsgi and be more detailed on local set upJohn Nduli
2024-08-02feat: improve local set up utility functionsJohn Nduli
Ensures running `init_dev_users` and `init_dev_clients` multiple times succeeds and updates the local database entry. Also provide a custom flag to set the gn2's client url and add jwt-bearer to list of accepted grants.
2024-08-02fix: use json to support parsing oauth2 requestsJohn Nduli
The local sign in request used by gn2 uses json. However, the default parsing assumes form data, see: - https://github.com/lepture/authlib/blob/v1.2.0/authlib/integrations/flask_oauth2/authorization_server.py#L72 - https://github.com/lepture/authlib/blob/v1.2.0/authlib/integrations/flask_helpers.py#L5 We create a custom Authorization server that defaults to `use_json=True` when creating the oauth request object
2024-08-01Handle generic exception and return a value.enable-key-rotationFrederick Muriuki Muriithi
2024-07-31Add missing image for favicon.icoFrederick Muriuki Muriithi
2024-07-31Update all endpoints to use the `client_secret_post` auth method.Frederick Muriuki Muriithi
2024-07-31Use customised JWTBearerToken classFrederick Muriuki Muriithi
2024-07-31Extend default JWTBearerToken to include a user member.Frederick Muriuki Muriithi
2024-07-31Authenticate JWTs using all available keys.Frederick Muriuki Muriithi
2024-07-31Add endpoint for favicon.icoFrederick Muriuki Muriithi
Helps with silencing NotFound errors in the logs.
2024-07-31Add some debug logging for errors.Frederick Muriuki Muriithi
2024-07-31Setup secrets for test to prevent errors.Frederick Muriuki Muriithi
2024-07-31Bug: Pass in app rather than path.Frederick Muriuki Muriithi
2024-07-31Fetch a client's JWKs from a URIFrederick Muriuki Muriithi
2024-07-31Enable registration of a public-jwks-uri for every clientFrederick Muriuki Muriithi
2024-07-31Fix styling: Use bootstrap styling.Frederick Muriuki Muriithi
2024-07-31Remove the `CLIENTS_SSL_PUBLIC_KEYS_DIR` configurationFrederick Muriuki Muriithi
Moving forward, each client will advertise it's current JWKs at a known endpoint, and we'll use those, rather than having a configuration that requires manual update of the certificates. This will make it easier to implement key rotation on the clients too.
2024-07-31Enable external configuration of session expiry periodFrederick Muriuki Muriithi
Enable passing in the number of minutes that a session can be valid for. This enables the length of time that the session can last to be configurable rather than hard-coded.
2024-07-31Ignore warning from mypy.Frederick Muriuki Muriithi
2024-07-31Validate JWTs against all existing JWKs.Frederick Muriuki Muriithi
2024-07-31Remove obsoleted SSL_PRIVATE_KEY configurationFrederick Muriuki Muriithi
With the key rotation in place, eliminate the use of the SSL_PRIVATE_KEY configuration which pointed to a specific non-changing JWK.