diff options
Diffstat (limited to 'tests')
| -rw-r--r-- | tests/unit/auth/fixtures/group_fixtures.py | 21 | ||||
| -rw-r--r-- | tests/unit/auth/fixtures/resource_fixtures.py | 48 | ||||
| -rw-r--r-- | tests/unit/auth/fixtures/role_fixtures.py | 2 | ||||
| -rw-r--r-- | tests/unit/auth/fixtures/user_fixtures.py | 21 | ||||
| -rw-r--r-- | tests/unit/auth/test_groups.py | 2 | ||||
| -rw-r--r-- | tests/unit/auth/test_resources.py | 18 |
6 files changed, 82 insertions, 30 deletions
diff --git a/tests/unit/auth/fixtures/group_fixtures.py b/tests/unit/auth/fixtures/group_fixtures.py index 2e8cd9a..da1c4cd 100644 --- a/tests/unit/auth/fixtures/group_fixtures.py +++ b/tests/unit/auth/fixtures/group_fixtures.py @@ -1,5 +1,6 @@ """Fixtures and utilities for group-related tests""" import uuid +import datetime import pytest @@ -7,8 +8,12 @@ from gn_auth.auth.db import sqlite3 as db from gn_auth.auth.authorisation.resources.groups import Group from gn_auth.auth.authorisation.resources import Resource, ResourceCategory +from .user_fixtures import TEST_USERS from .resource_fixtures import TEST_RESOURCES + +_created_ = datetime.datetime.now() + TEST_GROUP_01 = Group(uuid.UUID("9988c21d-f02f-4d45-8966-22c968ac2fbf"), "TheTestGroup", {}) TEST_GROUP_02 = Group(uuid.UUID("e37d59d7-c05e-4d67-b479-81e627d8d634"), @@ -24,16 +29,20 @@ GROUPS_AS_RESOURCES = tuple({ "resource_id": res_id, "resource_name": group.group_name, "category_id": str(GROUP_CATEGORY.resource_category_id), - "public": "0" + "public": "0", + "created_by": str(TEST_USERS[0].user_id), + "created_at": _created_.timestamp() } for res_id, group in zip( ("38d1807d-105f-44a7-8327-7e2d973b6d8d", "89458ef6-e090-4b53-8c2c-59eaf2785f11"), TEST_GROUPS)) GROUP_RESOURCES = tuple( - Resource(uuid.UUID(row["resource_id"]), - row["resource_name"], + Resource(uuid.UUID(row["resource_id"]),# type: ignore[arg-type] + row["resource_name"],# type: ignore[arg-type] GROUP_CATEGORY, - False) + False, + created_by=TEST_USERS[0], + created_at=_created_) for row in GROUPS_AS_RESOURCES) @@ -46,7 +55,7 @@ def __gtuple__(cursor): return tuple(dict(row) for row in cursor.fetchall()) @pytest.fixture(scope="function") -def fxtr_group(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name] +def fxtr_group(conn_after_auth_migrations, fxtr_users):# pylint: disable=[redefined-outer-name, unused-argument] """Fixture: setup a test group.""" with db.cursor(conn_after_auth_migrations) as cursor: cursor.executemany( @@ -57,7 +66,7 @@ def fxtr_group(conn_after_auth_migrations):# pylint: disable=[redefined-outer-na cursor.executemany( "INSERT INTO resources " - "VALUES(:resource_id, :resource_name, :category_id, :public)", + "VALUES(:resource_id, :resource_name, :category_id, :public, :created_by, :created_at)", GROUPS_AS_RESOURCES) cursor.executemany( diff --git a/tests/unit/auth/fixtures/resource_fixtures.py b/tests/unit/auth/fixtures/resource_fixtures.py index e06f64e..b570a49 100644 --- a/tests/unit/auth/fixtures/resource_fixtures.py +++ b/tests/unit/auth/fixtures/resource_fixtures.py @@ -1,11 +1,15 @@ """Fixtures and utilities for resource-related tests""" import uuid +import datetime import pytest from gn_auth.auth.db import sqlite3 as db from gn_auth.auth.authorisation.resources import Resource, ResourceCategory +from .user_fixtures import TEST_USERS + +_created_ = datetime.datetime.now() SYSTEM_CATEGORY = ResourceCategory( uuid.UUID("aa3d787f-af6a-44fa-9b0b-c82d40e54ad2"), @@ -15,48 +19,74 @@ SYSTEM_RESOURCE = Resource( uuid.UUID("0248b289-b277-4eaa-8c94-88a434d14b6e"), "GeneNetwork System", SYSTEM_CATEGORY, - True) + True, + resource_data=tuple(), + created_by=TEST_USERS[4], + created_at=_created_) TEST_RESOURCES = ( Resource(uuid.UUID("26ad1668-29f5-439d-b905-84d551f85955"), "ResourceG01R01", ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"), "genotype", "Genotype Dataset"), - True), + True, + resource_data=tuple(), + created_by=TEST_USERS[0], + created_at=_created_), Resource(uuid.UUID("2130aec0-fefd-434d-92fd-9ca342348b2d"), "ResourceG01R02", ResourceCategory(uuid.UUID("548d684b-d4d1-46fb-a6d3-51a56b7da1b3"), "phenotype", "Phenotype (Publish) Dataset"), - False), + False, + resource_data=tuple(), + created_by=TEST_USERS[0], + created_at=_created_), Resource(uuid.UUID("e9a1184a-e8b4-49fb-b713-8d9cbeea5b83"), "ResourceG01R03", ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"), "mrna", "mRNA Dataset"), - False), + False, + resource_data=tuple(), + created_by=TEST_USERS[0], + created_at=_created_), Resource(uuid.UUID("14496a1c-c234-49a2-978c-8859ea274054"), "ResourceG02R01", ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"), "genotype", "Genotype Dataset"), - False), + False, + resource_data=tuple(), + created_by=TEST_USERS[0], + created_at=_created_), Resource(uuid.UUID("04ad9e09-94ea-4390-8a02-11f92999806b"), "ResourceG02R02", ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"), "mrna", "mRNA Dataset"), - True)) + True, + resource_data=tuple(), + created_by=TEST_USERS[0], + created_at=_created_)) TEST_RESOURCES_PUBLIC = (SYSTEM_RESOURCE, TEST_RESOURCES[0], TEST_RESOURCES[4]) @pytest.fixture(scope="function") -def fxtr_resources(conn_after_auth_migrations): +def fxtr_resources(conn_after_auth_migrations, fxtr_users):# pylint: disable=[unused-argument] """fixture: setup test resources in the database""" conn = conn_after_auth_migrations with db.cursor(conn) as cursor: cursor.executemany( - "INSERT INTO resources VALUES (?,?,?,?)", + "INSERT INTO resources VALUES (?,?,?,?,?,?)", ((str(res.resource_id), res.resource_name, str(res.resource_category.resource_category_id), - 1 if res.public else 0) for res in TEST_RESOURCES)) + 1 if res.public else 0, + str(res.created_by.user_id), + res.created_at.timestamp()) for res in TEST_RESOURCES)) + cursor.execute( + "UPDATE resources SET created_by=?, created_at=? " + "WHERE resource_id=?", + (str(SYSTEM_RESOURCE.created_by.user_id), + SYSTEM_RESOURCE.created_at.timestamp(), + str(SYSTEM_RESOURCE.resource_id))) yield (conn, TEST_RESOURCES) diff --git a/tests/unit/auth/fixtures/role_fixtures.py b/tests/unit/auth/fixtures/role_fixtures.py index 63a3fca..24e8e9f 100644 --- a/tests/unit/auth/fixtures/role_fixtures.py +++ b/tests/unit/auth/fixtures/role_fixtures.py @@ -108,7 +108,7 @@ def fxtr_resource_roles(fxtr_resources, fxtr_roles):# pylint: disable=[redefined @pytest.fixture(scope="function") -def fxtr_setup_group_leaders(fxtr_users): +def fxtr_setup_group_leaders(fxtr_users, fxtr_group):# pylint: disable=[unused-argument] """Define what roles users have that target resources of type 'Group'.""" conn, users = fxtr_users with db.cursor(conn) as cursor: diff --git a/tests/unit/auth/fixtures/user_fixtures.py b/tests/unit/auth/fixtures/user_fixtures.py index 1cf0e20..0872142 100644 --- a/tests/unit/auth/fixtures/user_fixtures.py +++ b/tests/unit/auth/fixtures/user_fixtures.py @@ -1,28 +1,35 @@ """Fixtures and utilities for user-related tests""" import uuid +import datetime import pytest from gn_auth.auth.db import sqlite3 as db from gn_auth.auth.authentication.users import User, hash_password +_created_ = datetime.datetime.now() + TEST_USERS = ( User(uuid.UUID("ecb52977-3004-469e-9428-2a1856725c7f"), "group@lead.er", - "Group Leader"), + "Group Leader", created=_created_), User(uuid.UUID("21351b66-8aad-475b-84ac-53ce528451e3"), - "group@mem.ber01", "Group Member 01"), + "group@mem.ber01", "Group Member 01", created=_created_), User(uuid.UUID("ae9c6245-0966-41a5-9a5e-20885a96bea7"), - "group@mem.ber02", "Group Member 02"), + "group@mem.ber02", "Group Member 02", created=_created_), User(uuid.UUID("9a0c7ce5-2f40-4e78-979e-bf3527a59579"), - "unaff@iliated.user", "Unaffiliated User")) + "unaff@iliated.user", "Unaffiliated User", created=_created_), + User(uuid.UUID("60faf8a7-832b-471e-b6a0-bd4013f1fa0e"), + "sys@admin.user", "System Admin User", created=_created_)) @pytest.fixture(scope="function") -def fxtr_users(conn_after_auth_migrations, fxtr_group):# pylint: disable=[redefined-outer-name, unused-argument] +def fxtr_users(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name, unused-argument] """Fixture: setup test users.""" - query = "INSERT INTO users(user_id, email, name) VALUES (?, ?, ?)" + query = ( + "INSERT INTO users(user_id, email, name, created) VALUES (?, ?, ?, ?)") with db.cursor(conn_after_auth_migrations) as cursor: cursor.executemany(query, ( - (str(user.user_id), user.email, user.name) for user in TEST_USERS)) + (str(user.user_id), user.email, user.name, user.created.timestamp()) + for user in TEST_USERS)) yield (conn_after_auth_migrations, TEST_USERS) diff --git a/tests/unit/auth/test_groups.py b/tests/unit/auth/test_groups.py index 346beb9..6f1e8cd 100644 --- a/tests/unit/auth/test_groups.py +++ b/tests/unit/auth/test_groups.py @@ -61,6 +61,8 @@ def __cleanup_create_group__(conn, user, group): (str(user.user_id), str(grp_rsc["resource_id"]))) cursor.execute("DELETE FROM group_resources WHERE group_id=?", (str(group.group_id),)) + cursor.execute("DELETE FROM resources WHERE resource_id=?", + (grp_rsc["resource_id"],)) cursor.execute("DELETE FROM groups WHERE group_id=?", (str(group.group_id),)) diff --git a/tests/unit/auth/test_resources.py b/tests/unit/auth/test_resources.py index 04da6df..81f967e 100644 --- a/tests/unit/auth/test_resources.py +++ b/tests/unit/auth/test_resources.py @@ -114,19 +114,19 @@ def test_public_resources(fxtr_resources): "user,expected", tuple(zip( conftest.TEST_USERS, - (sorted( + ((sorted( {res.resource_id: res for res in ((conftest.GROUP_RESOURCES[0],) + conftest.TEST_RESOURCES_GROUP_01 + conftest.TEST_RESOURCES_PUBLIC)}.values(), - key=sort_key_resources), - sorted( + key=sort_key_resources), 6), + (sorted( {res.resource_id: res for res in ((conftest.TEST_RESOURCES_GROUP_01[1],) + conftest.TEST_RESOURCES_PUBLIC)}.values() , - key=sort_key_resources), - PUBLIC_RESOURCES, PUBLIC_RESOURCES)))) + key=sort_key_resources), 4), + (PUBLIC_RESOURCES, 3), (PUBLIC_RESOURCES, 3))))) def test_user_resources(fxtr_resource_user_roles, user, expected): """ GIVEN: some resources in the database @@ -134,6 +134,10 @@ def test_user_resources(fxtr_resource_user_roles, user, expected): THEN: list only the resources for which the user can access """ conn, *_others = fxtr_resource_user_roles + uresources, count = user_resources(conn, user) + eresources, ecount = expected + assert count == ecount assert sorted( - {res.resource_id: res for res in user_resources(conn, user) - }.values(), key=sort_key_resources) == expected + {res.resource_id: res for res in uresources}.values(), + key=sort_key_resources + ) == eresources |