diff options
Diffstat (limited to 'scripts')
-rw-r--r-- | scripts/assign_data_to_default_admin.py | 3 | ||||
-rw-r--r-- | scripts/batch_assign_data_to_default_admin.py | 2 | ||||
-rw-r--r-- | scripts/link_inbredsets.py | 3 | ||||
-rw-r--r-- | scripts/search_phenotypes.py | 2 |
4 files changed, 4 insertions, 6 deletions
diff --git a/scripts/assign_data_to_default_admin.py b/scripts/assign_data_to_default_admin.py index d10b687..69fc50c 100644 --- a/scripts/assign_data_to_default_admin.py +++ b/scripts/assign_data_to_default_admin.py @@ -11,10 +11,9 @@ from pathlib import Path from uuid import UUID, uuid4 import click +from gn_libs import mysqldb as biodb from MySQLdb.cursors import DictCursor -from gn_auth.auth.db import mariadb as biodb - import gn_auth.auth.db.sqlite3 as authdb from gn_auth.auth.authentication.users import User from gn_auth.auth.authorisation.roles.models import ( diff --git a/scripts/batch_assign_data_to_default_admin.py b/scripts/batch_assign_data_to_default_admin.py index 3df123d..a468019 100644 --- a/scripts/batch_assign_data_to_default_admin.py +++ b/scripts/batch_assign_data_to_default_admin.py @@ -7,10 +7,10 @@ import logging from pathlib import Path import click +from gn_libs import mysqldb as biodb from pymonad.maybe import Just, Maybe, Nothing from pymonad.tools import monad_from_none_or_value -from gn_auth.auth.db import mariadb as biodb from gn_auth.auth.db import sqlite3 as authdb from gn_auth.auth.authentication.users import User from gn_auth.auth.authorisation.resources.groups.models import ( diff --git a/scripts/link_inbredsets.py b/scripts/link_inbredsets.py index 5db7ea8..c78a050 100644 --- a/scripts/link_inbredsets.py +++ b/scripts/link_inbredsets.py @@ -6,11 +6,10 @@ import uuid from pathlib import Path import click +from gn_libs import mysqldb as biodb import gn_auth.auth.db.sqlite3 as authdb -from gn_auth.auth.db import mariadb as biodb - from scripts.assign_data_to_default_admin import ( sys_admins, admin_group, select_sys_admin) diff --git a/scripts/search_phenotypes.py b/scripts/search_phenotypes.py index 20d91c9..3bf26dd 100644 --- a/scripts/search_phenotypes.py +++ b/scripts/search_phenotypes.py @@ -11,9 +11,9 @@ from datetime import datetime, timedelta import click import redis import requests +from gn_libs import mysqldb as gn3db from gn_auth import jobs -from gn_auth.auth.db import mariadb as gn3db from gn_auth.auth.db import sqlite3 as authdb from gn_auth.settings import SQL_URI, AUTH_DB from gn_auth.auth.authorisation.data.phenotypes import linked_phenotype_data |