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-rw-r--r--migrations/auth/20230404_01_VKxXg-create-linked-genotype-data-table.py29
1 files changed, 29 insertions, 0 deletions
diff --git a/migrations/auth/20230404_01_VKxXg-create-linked-genotype-data-table.py b/migrations/auth/20230404_01_VKxXg-create-linked-genotype-data-table.py
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+++ b/migrations/auth/20230404_01_VKxXg-create-linked-genotype-data-table.py
@@ -0,0 +1,29 @@
+"""
+Create linked genotype data table
+"""
+
+from yoyo import step
+
+__depends__ = {'20230322_02_Ll854-create-phenotype-resources-table'}
+
+steps = [
+ step(
+ """
+ CREATE TABLE IF NOT EXISTS linked_genotype_data
+ -- Link genotype data in MariaDB to user groups in auth system
+ (
+ data_link_id TEXT NOT NULL PRIMARY KEY, -- A new ID for the auth system
+ group_id TEXT NOT NULL, -- The user group the data is linked to
+ SpeciesId TEXT NOT NULL, -- The species in MariaDB
+ InbredSetId TEXT NOT NULL, -- The traits group in MariaDB
+ GenoFreezeId TEXT NOT NULL, -- The dataset Id in MariaDB
+ dataset_name TEXT, -- dataset Name in MariaDB
+ dataset_fullname, -- dataset FullName in MariaDB
+ dataset_shortname, -- dataset ShortName in MariaDB
+ FOREIGN KEY (group_id)
+ REFERENCES groups(group_id) ON UPDATE CASCADE ON DELETE RESTRICT
+ UNIQUE (SpeciesId, InbredSetId, GenoFreezeId)
+ ) WITHOUT ROWID
+ """,
+ "DROP TABLE IF EXISTS linked_genotype_data")
+]