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-rw-r--r--gn_auth/auth/authorisation/resources/views.py33
1 files changed, 28 insertions, 5 deletions
diff --git a/gn_auth/auth/authorisation/resources/views.py b/gn_auth/auth/authorisation/resources/views.py
index 494fde9..1c4104a 100644
--- a/gn_auth/auth/authorisation/resources/views.py
+++ b/gn_auth/auth/authorisation/resources/views.py
@@ -40,15 +40,22 @@ from gn_auth.auth.authentication.oauth2.resource_server import require_oauth
from gn_auth.auth.authentication.users import User, user_by_id, user_by_email
from .checks import authorised_for
+from .inbredset.views import popbp
+from .genotypes.views import genobp
+from .phenotypes.views import phenobp
+from .errors import MissingGroupError
+from .groups.models import Group, user_group
from .models import (
Resource, resource_data, resource_by_id, public_resources,
resource_categories, assign_resource_user, link_data_to_resource,
unassign_resource_user, resource_category_by_id, user_roles_on_resources,
unlink_data_from_resource, create_resource as _create_resource,
get_resource_id)
-from .groups.models import Group
resources = Blueprint("resources", __name__)
+resources.register_blueprint(popbp, url_prefix="/")
+resources.register_blueprint(genobp, url_prefix="/")
+resources.register_blueprint(phenobp, url_prefix="/")
@resources.route("/categories", methods=["GET"])
@require_oauth("profile group resource")
@@ -68,13 +75,20 @@ def create_resource() -> Response:
resource_name = form.get("resource_name")
resource_category_id = UUID(form.get("resource_category"))
db_uri = app.config["AUTH_DB"]
- with db.connection(db_uri) as conn:
+ with (db.connection(db_uri) as conn,
+ db.cursor(conn) as cursor):
try:
+ group = user_group(conn, the_token.user).maybe(
+ False, lambda grp: grp)# type: ignore[misc, arg-type]
+ if not group:
+ raise MissingGroupError(# Not all resources require an owner group
+ "User with no group cannot create a resource.")
resource = _create_resource(
- conn,
+ cursor,
resource_name,
resource_category_by_id(conn, resource_category_id),
the_token.user,
+ group,
(form.get("public") == "on"))
return jsonify(asdict(resource))
except sqlite3.IntegrityError as sql3ie:
@@ -397,9 +411,18 @@ def resource_roles(resource_id: UUID) -> Response:
"ON rp.privilege_id=p.privilege_id "
"WHERE rr.resource_id=? AND rr.role_created_by=?",
(str(resource_id), str(_token.user.user_id)))
- results = cursor.fetchall()
+ user_created = db_rows_to_roles(cursor.fetchall())
+
+ cursor.execute(
+ "SELECT ur.user_id, ur.resource_id, r.*, p.* FROM user_roles AS ur "
+ "INNER JOIN roles AS r ON ur.role_id=r.role_id "
+ "INNER JOIN role_privileges AS rp ON r.role_id=rp.role_id "
+ "INNER JOIN privileges AS p ON rp.privilege_id=p.privilege_id "
+ "WHERE resource_id=? AND user_id=?",
+ (str(resource_id), str(_token.user.user_id)))
+ assigned_to_user = db_rows_to_roles(cursor.fetchall())
- return db_rows_to_roles(results)
+ return assigned_to_user + user_created
return jsonify(with_db_connection(__roles__))