diff options
Diffstat (limited to 'gn_auth/auth/authorisation/resources/groups/views.py')
| -rw-r--r-- | gn_auth/auth/authorisation/resources/groups/views.py | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/gn_auth/auth/authorisation/resources/groups/views.py b/gn_auth/auth/authorisation/resources/groups/views.py index 920f504..746e23c 100644 --- a/gn_auth/auth/authorisation/resources/groups/views.py +++ b/gn_auth/auth/authorisation/resources/groups/views.py @@ -9,10 +9,10 @@ from dataclasses import asdict from MySQLdb.cursors import DictCursor from flask import jsonify, Response, Blueprint, current_app -from gn_auth.auth.requests import request_json +from gn_libs import mysqldb as gn3db +from gn_auth.auth.requests import request_json from gn_auth.auth.db import sqlite3 as db -from gn_auth.auth.db import mariadb as gn3db from gn_auth.auth.db.sqlite3 import with_db_connection from gn_auth.auth.authorisation.privileges import privileges_by_ids @@ -169,7 +169,7 @@ def unlinked_genotype_data( return tuple(dict(row) for row in cursor.fetchall()) def unlinked_phenotype_data( - authconn: db.DbConnection, gn3conn: gn3db.DbConnection, + authconn: db.DbConnection, gn3conn: gn3db.Connection, group: Group) -> tuple[dict, ...]: """ Retrieve all phenotype data linked to a group but not linked to any @@ -235,7 +235,7 @@ def unlinked_data(resource_type: str) -> Response: if resource_type in ("system", "group"): return jsonify(tuple()) - if resource_type not in ("all", "mrna", "genotype", "phenotype"): + if resource_type not in ("all", "mrna", "genotype", "phenotype", "inbredset-group"): raise AuthorisationError(f"Invalid resource type {resource_type}") with require_oauth.acquire("profile group resource") as the_token: @@ -253,7 +253,8 @@ def unlinked_data(resource_type: str) -> Response: "genotype": unlinked_genotype_data, "phenotype": lambda conn, grp: partial( unlinked_phenotype_data, gn3conn=gn3conn)( - authconn=conn, group=grp) + authconn=conn, group=grp), + "inbredset-group": lambda authconn, ugroup: [] # Still need to implement this } return jsonify(tuple( dict(row) for row in unlinked_fns[resource_type]( |