diff options
Diffstat (limited to 'gn_auth/auth/authorisation/resources/groups/data.py')
| -rw-r--r-- | gn_auth/auth/authorisation/resources/groups/data.py | 12 |
1 files changed, 6 insertions, 6 deletions
diff --git a/gn_auth/auth/authorisation/resources/groups/data.py b/gn_auth/auth/authorisation/resources/groups/data.py index 702955d..ad0dfba 100644 --- a/gn_auth/auth/authorisation/resources/groups/data.py +++ b/gn_auth/auth/authorisation/resources/groups/data.py @@ -1,7 +1,7 @@ """Handles the resource objects' data.""" +from gn_libs import mysqldb as gn3db from MySQLdb.cursors import DictCursor -from gn_auth.auth.db import mariadb as gn3db from gn_auth.auth.db import sqlite3 as authdb from gn_auth.auth.errors import NotFoundError @@ -9,7 +9,7 @@ from gn_auth.auth.authorisation.checks import authorised_p from gn_auth.auth.authorisation.resources.groups import Group def __fetch_mrna_data_by_ids__( - conn: gn3db.DbConnection, dataset_ids: tuple[str, ...]) -> tuple[ + conn: gn3db.Connection, dataset_ids: tuple[str, ...]) -> tuple[ dict, ...]: """Fetch mRNA Assay data by ID.""" with conn.cursor(DictCursor) as cursor: @@ -27,7 +27,7 @@ def __fetch_mrna_data_by_ids__( raise NotFoundError("Could not find mRNA Assay data with the given ID.") def __fetch_geno_data_by_ids__( - conn: gn3db.DbConnection, dataset_ids: tuple[str, ...]) -> tuple[ + conn: gn3db.Connection, dataset_ids: tuple[str, ...]) -> tuple[ dict, ...]: """Fetch genotype data by ID.""" with conn.cursor(DictCursor) as cursor: @@ -45,7 +45,7 @@ def __fetch_geno_data_by_ids__( raise NotFoundError("Could not find Genotype data with the given ID.") def __fetch_pheno_data_by_ids__( - conn: gn3db.DbConnection, dataset_ids: tuple[str, ...]) -> tuple[ + conn: gn3db.Connection, dataset_ids: tuple[str, ...]) -> tuple[ dict, ...]: """Fetch phenotype data by ID.""" with conn.cursor(DictCursor) as cursor: @@ -67,7 +67,7 @@ def __fetch_pheno_data_by_ids__( "Could not find Phenotype/Publish data with the given IDs.") def __fetch_data_by_id( - conn: gn3db.DbConnection, dataset_type: str, + conn: gn3db.Connection, dataset_type: str, dataset_ids: tuple[str, ...]) -> tuple[dict, ...]: """Fetch data from MySQL by IDs.""" fetch_fns = { @@ -83,7 +83,7 @@ def __fetch_data_by_id( "group(s)."), oauth2_scope="profile group resource") def link_data_to_group( - authconn: authdb.DbConnection, gn3conn: gn3db.DbConnection, + authconn: authdb.DbConnection, gn3conn: gn3db.Connection, dataset_type: str, dataset_ids: tuple[str, ...], group: Group) -> tuple[ dict, ...]: """Link the given data to the specified group.""" |