Copy over files from GN3 repository.

1 files changed, 147 insertions, 0 deletions

diff --git a/tests/unit/auth/fixtures/group_fixtures.py b/tests/unit/auth/fixtures/group_fixtures.py
new file mode 100644
index 0000000..d7bbc56
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+++ b/tests/unit/auth/fixtures/group_fixtures.py
@@ -0,0 +1,147 @@
+"""Fixtures and utilities for group-related tests"""
+import uuid
+
+import pytest
+
+from gn3.auth import db
+from gn3.auth.authorisation.groups import Group, GroupRole
+from gn3.auth.authorisation.resources import Resource, ResourceCategory
+
+from .role_fixtures import RESOURCE_EDITOR_ROLE, RESOURCE_READER_ROLE
+
+TEST_GROUP_01 = Group(uuid.UUID("9988c21d-f02f-4d45-8966-22c968ac2fbf"),
+                      "TheTestGroup", {})
+TEST_GROUP_02 = Group(uuid.UUID("e37d59d7-c05e-4d67-b479-81e627d8d634"),
+                      "AnotherTestGroup", {})
+TEST_GROUPS = (TEST_GROUP_01, TEST_GROUP_02)
+
+TEST_RESOURCES_GROUP_01 = (
+    Resource(TEST_GROUPS[0], uuid.UUID("26ad1668-29f5-439d-b905-84d551f85955"),
+             "ResourceG01R01",
+             ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
+                              "genotype", "Genotype Dataset"),
+             True),
+    Resource(TEST_GROUPS[0], uuid.UUID("2130aec0-fefd-434d-92fd-9ca342348b2d"),
+             "ResourceG01R02",
+             ResourceCategory(uuid.UUID("548d684b-d4d1-46fb-a6d3-51a56b7da1b3"),
+                              "phenotype", "Phenotype (Publish) Dataset"),
+             False),
+    Resource(TEST_GROUPS[0], uuid.UUID("e9a1184a-e8b4-49fb-b713-8d9cbeea5b83"),
+             "ResourceG01R03",
+             ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
+                              "mrna", "mRNA Dataset"),
+             False))
+
+TEST_RESOURCES_GROUP_02 = (
+    Resource(TEST_GROUPS[1], uuid.UUID("14496a1c-c234-49a2-978c-8859ea274054"),
+             "ResourceG02R01",
+             ResourceCategory(uuid.UUID("48056f84-a2a6-41ac-8319-0e1e212cba2a"),
+                              "genotype", "Genotype Dataset"),
+             False),
+    Resource(TEST_GROUPS[1], uuid.UUID("04ad9e09-94ea-4390-8a02-11f92999806b"),
+             "ResourceG02R02",
+             ResourceCategory(uuid.UUID("fad071a3-2fc8-40b8-992b-cdefe7dcac79"),
+                              "mrna", "mRNA Dataset"),
+             True))
+
+TEST_RESOURCES = TEST_RESOURCES_GROUP_01 + TEST_RESOURCES_GROUP_02
+TEST_RESOURCES_PUBLIC = (TEST_RESOURCES_GROUP_01[0], TEST_RESOURCES_GROUP_02[1])
+
+def __gtuple__(cursor):
+    return tuple(dict(row) for row in cursor.fetchall())
+
+@pytest.fixture(scope="function")
+def fxtr_group(conn_after_auth_migrations):# pylint: disable=[redefined-outer-name]
+    """Fixture: setup a test group."""
+    query = "INSERT INTO groups(group_id, group_name) VALUES (?, ?)"
+    with db.cursor(conn_after_auth_migrations) as cursor:
+        cursor.executemany(
+            query, tuple(
+                (str(group.group_id), group.group_name)
+                for group in TEST_GROUPS))
+
+    yield (conn_after_auth_migrations, TEST_GROUPS[0])
+
+    with db.cursor(conn_after_auth_migrations) as cursor:
+        cursor.executemany(
+            "DELETE FROM groups WHERE group_id=?",
+            ((str(group.group_id),) for group in TEST_GROUPS))
+
+@pytest.fixture(scope="function")
+def fxtr_users_in_group(fxtr_group, fxtr_users):# pylint: disable=[redefined-outer-name, unused-argument]
+    """Link the users to the groups."""
+    conn, all_users = fxtr_users
+    users = tuple(
+        user for user in all_users if user.email not in ("unaff@iliated.user",))
+    query_params = tuple(
+        (str(TEST_GROUP_01.group_id), str(user.user_id)) for user in users)
+    with db.cursor(conn) as cursor:
+        cursor.executemany(
+            "INSERT INTO group_users(group_id, user_id) VALUES (?, ?)",
+            query_params)
+
+    yield (conn, TEST_GROUP_01, users)
+
+    with db.cursor(conn) as cursor:
+        cursor.executemany(
+            "DELETE FROM group_users WHERE group_id=? AND user_id=?",
+            query_params)
+
+@pytest.fixture(scope="function")
+def fxtr_group_roles(fxtr_group, fxtr_roles):# pylint: disable=[redefined-outer-name,unused-argument]
+    """Link roles to group"""
+    group_roles = (
+        GroupRole(uuid.UUID("9c25efb2-b477-4918-a95c-9914770cbf4d"),
+                  TEST_GROUP_01, RESOURCE_EDITOR_ROLE),
+        GroupRole(uuid.UUID("82aed039-fe2f-408c-ab1e-81cd1ba96630"),
+                  TEST_GROUP_02, RESOURCE_READER_ROLE))
+    conn, groups = fxtr_group
+    with db.cursor(conn) as cursor:
+        cursor.executemany(
+            "INSERT INTO group_roles VALUES (?, ?, ?)",
+            ((str(role.group_role_id), str(role.group.group_id),
+              str(role.role.role_id))
+             for role in group_roles))
+
+    yield conn, groups, group_roles
+
+    with db.cursor(conn) as cursor:
+        cursor.execute("SELECT * FROM group_user_roles_on_resources")
+        cursor.executemany(
+            ("DELETE FROM group_roles "
+             "WHERE group_role_id=? AND group_id=? AND role_id=?"),
+            ((str(role.group_role_id), str(role.group.group_id),
+              str(role.role.role_id))
+             for role in group_roles))
+
+@pytest.fixture(scope="function")
+def fxtr_group_user_roles(fxtr_resources, fxtr_group_roles, fxtr_users_in_group):#pylint: disable=[redefined-outer-name,unused-argument]
+    """Assign roles to users."""
+    conn, _groups, group_roles = fxtr_group_roles
+    _conn, group_resources = fxtr_resources
+    _conn, _group, group_users = fxtr_users_in_group
+    users = tuple(user for user in group_users if user.email
+                  not in ("unaff@iliated.user", "group@lead.er"))
+    users_roles_resources = (
+        (user, RESOURCE_EDITOR_ROLE, TEST_RESOURCES_GROUP_01[1])
+        for user in users if user.email == "group@mem.ber01")
+    with db.cursor(conn) as cursor:
+        params = tuple({
+            "group_id": str(resource.group.group_id),
+            "user_id": str(user.user_id),
+            "role_id": str(role.role_id),
+            "resource_id": str(resource.resource_id)
+        } for user, role, resource in users_roles_resources)
+        cursor.executemany(
+            ("INSERT INTO group_user_roles_on_resources "
+             "VALUES (:group_id, :user_id, :role_id, :resource_id)"),
+            params)
+
+    yield conn, group_users, group_roles, group_resources
+
+    with db.cursor(conn) as cursor:
+        cursor.executemany(
+            ("DELETE FROM group_user_roles_on_resources WHERE "
+             "group_id=:group_id AND user_id=:user_id AND role_id=:role_id AND "
+             "resource_id=:resource_id"),
+            params)