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author | Frederick Muriuki Muriithi | 2023-08-07 07:58:09 +0300 |
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committer | Frederick Muriuki Muriithi | 2023-08-07 09:26:12 +0300 |
commit | 6d9c61dc0072b96b12153e64940b465306f25bfb (patch) | |
tree | a4957c7967e56b4527c1e926744a65a3326935ce /gn_auth/auth/authorisation/groups/data.py | |
parent | 6ab6d46ab4b1611ed72bdbce85cf9324ce69b305 (diff) | |
download | gn-auth-6d9c61dc0072b96b12153e64940b465306f25bfb.tar.gz |
Change imports to new unified db module.
Diffstat (limited to 'gn_auth/auth/authorisation/groups/data.py')
-rw-r--r-- | gn_auth/auth/authorisation/groups/data.py | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/gn_auth/auth/authorisation/groups/data.py b/gn_auth/auth/authorisation/groups/data.py index d05747b..2d9ddb5 100644 --- a/gn_auth/auth/authorisation/groups/data.py +++ b/gn_auth/auth/authorisation/groups/data.py @@ -1,14 +1,14 @@ """Handles the resource objects' data.""" from MySQLdb.cursors import DictCursor -from gn_auth import db_utils as gn3db -from gn_auth.auth import db as authdb +from gn_auth.auth.db import mariadb as gn3db +from gn_auth.auth.db import sqlite3 as authdb from gn_auth.auth.authorisation.groups import Group from gn_auth.auth.authorisation.checks import authorised_p from gn_auth.auth.authorisation.errors import NotFoundError def __fetch_mrna_data_by_ids__( - conn: gn3db.Connection, dataset_ids: tuple[str, ...]) -> tuple[ + conn: gn3db.DbConnection, dataset_ids: tuple[str, ...]) -> tuple[ dict, ...]: """Fetch mRNA Assay data by ID.""" with conn.cursor(DictCursor) as cursor: @@ -26,7 +26,7 @@ def __fetch_mrna_data_by_ids__( raise NotFoundError("Could not find mRNA Assay data with the given ID.") def __fetch_geno_data_by_ids__( - conn: gn3db.Connection, dataset_ids: tuple[str, ...]) -> tuple[ + conn: gn3db.DbConnection, dataset_ids: tuple[str, ...]) -> tuple[ dict, ...]: """Fetch genotype data by ID.""" with conn.cursor(DictCursor) as cursor: @@ -44,7 +44,7 @@ def __fetch_geno_data_by_ids__( raise NotFoundError("Could not find Genotype data with the given ID.") def __fetch_pheno_data_by_ids__( - conn: gn3db.Connection, dataset_ids: tuple[str, ...]) -> tuple[ + conn: gn3db.DbConnection, dataset_ids: tuple[str, ...]) -> tuple[ dict, ...]: """Fetch phenotype data by ID.""" with conn.cursor(DictCursor) as cursor: @@ -66,7 +66,7 @@ def __fetch_pheno_data_by_ids__( "Could not find Phenotype/Publish data with the given IDs.") def __fetch_data_by_id( - conn: gn3db.Connection, dataset_type: str, + conn: gn3db.DbConnection, dataset_type: str, dataset_ids: tuple[str, ...]) -> tuple[dict, ...]: """Fetch data from MySQL by IDs.""" fetch_fns = { @@ -82,7 +82,7 @@ def __fetch_data_by_id( "group(s)."), oauth2_scope="profile group resource") def link_data_to_group( - authconn: authdb.DbConnection, gn3conn: gn3db.Connection, + authconn: authdb.DbConnection, gn3conn: gn3db.DbConnection, dataset_type: str, dataset_ids: tuple[str, ...], group: Group) -> tuple[ dict, ...]: """Link the given data to the specified group.""" |