Remove dead code caught by vulture.

3 files changed, 0 insertions, 72 deletions

diff --git a/gn_auth/auth/authorisation/data/phenotypes.py b/gn_auth/auth/authorisation/data/phenotypes.py
index dddd5c9..92cbe89 100644
--- a/gn_auth/auth/authorisation/data/phenotypes.py
+++ b/gn_auth/auth/authorisation/data/phenotypes.py
@@ -13,7 +13,6 @@ from flask import request, jsonify, Response, Blueprint, current_app as app
 from gn_auth.auth.authentication.oauth2.resource_server import require_oauth
 
 from gn_auth.auth.errors import AuthorisationError
-from gn_auth.auth.authorisation.checks import authorised_p
 from gn_auth.auth.authorisation.resources.checks import can_delete
 from gn_auth.auth.authorisation.resources.system.models import system_resource
 from gn_auth.auth.authorisation.resources.groups.models import Group, group_resource
@@ -62,41 +61,6 @@ def linked_phenotype_data(
         gn3cursor.execute(query, params)
         return (item for item in gn3cursor.fetchall())
 
-@authorised_p(("system:data:link-to-group",),
-              error_description=(
-                  "You do not have sufficient privileges to link data to (a) "
-                  "group(s)."),
-              oauth2_scope="profile group resource")
-def ungrouped_phenotype_data(
-        authconn: authdb.DbConnection, gn3conn: gn3db.Connection):
-    """Retrieve phenotype data that is not linked to any user group."""
-    with gn3conn.cursor() as cursor:
-        params = tuple(
-            (row["SpeciesId"], row["InbredSetId"], row["PublishFreezeId"],
-             row["PublishXRefId"])
-            for row in linked_phenotype_data(authconn, gn3conn))
-        paramstr = ", ".join(["(?, ?, ?, ?)"] * len(params))
-        query = (
-            "SELECT spc.SpeciesId, spc.SpeciesName, iset.InbredSetId, "
-            "iset.InbredSetName, pf.Id AS PublishFreezeId, "
-            "pf.Name AS dataset_name, pf.FullName AS dataset_fullname, "
-            "pf.ShortName AS dataset_shortname, pxr.Id AS PublishXRefId "
-            "FROM "
-            "Species AS spc "
-            "INNER JOIN InbredSet AS iset "
-            "ON spc.SpeciesId=iset.SpeciesId "
-            "INNER JOIN PublishFreeze AS pf "
-            "ON iset.InbredSetId=pf.InbredSetId "
-            "INNER JOIN PublishXRef AS pxr "
-            "ON pf.InbredSetId=pxr.InbredSetId")
-        if len(params) > 0:
-            query = query + (
-                f" WHERE (iset.InbredSetId, pf.Id, pxr.Id) NOT IN ({paramstr})")
-
-        cursor.execute(query, params)
-        return tuple(dict(row) for row in cursor.fetchall())
-
-    return tuple()
 
 def pheno_traits_from_db(gn3conn: gn3db.Connection, params: tuple[dict, ...]) -> tuple[dict, ...]:
     """An internal utility function. Don't use outside of this module."""
diff --git a/gn_auth/auth/authorisation/data/views.py b/gn_auth/auth/authorisation/data/views.py
index fc1849f..584b239 100644
--- a/gn_auth/auth/authorisation/data/views.py
+++ b/gn_auth/auth/authorisation/data/views.py
@@ -49,34 +49,6 @@ data = Blueprint("data", __name__)
 data.register_blueprint(phenosbp, url_prefix="/phenotypes")
 
 
-def build_trait_name(trait_fullname):
-    """
-    Initialises the trait's name, and other values from the search data provided
-
-    This is a copy of `gn3.db.traits.build_trait_name` function.
-    """
-    def dataset_type(dset_name):
-        if dset_name.find('Temp') >= 0:
-            return "Temp"
-        if dset_name.find('Geno') >= 0:
-            return "Geno"
-        if dset_name.find('Publish') >= 0:
-            return "Publish"
-        return "ProbeSet"
-
-    name_parts = trait_fullname.split("::")
-    assert len(name_parts) >= 2, f"Name format error: '{trait_fullname}'"
-    dataset_name = name_parts[0]
-    dataset_type = dataset_type(dataset_name)
-    return {
-        "db": {
-            "dataset_name": dataset_name,
-            "dataset_type": dataset_type},
-        "trait_fullname": trait_fullname,
-        "trait_name": name_parts[1],
-        "cellid": name_parts[2] if len(name_parts) == 3 else ""
-    }
-
 @data.route("species")
 def list_species() -> Response:
     """List all available species information."""
diff --git a/gn_auth/auth/authorisation/users/admin/views.py b/gn_auth/auth/authorisation/users/admin/views.py
index 9bc1c36..62eccfd 100644
--- a/gn_auth/auth/authorisation/users/admin/views.py
+++ b/gn_auth/auth/authorisation/users/admin/views.py
@@ -1,6 +1,5 @@
 """UI for admin stuff"""
 import uuid
-import json
 import random
 import string
 from typing import Optional
@@ -240,13 +239,6 @@ def register_client():
         client_secret = raw_client_secret)
 
 
-def __parse_client__(sqlite3_row) -> dict:
-    """Parse the client details into python datatypes."""
-    return {
-        **dict(sqlite3_row),
-        "client_metadata": json.loads(sqlite3_row["client_metadata"])
-    }
-
 @admin.route("/list-client", methods=["GET"])
 @is_admin
 def list_clients():