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diff --git a/gnqa/paper1_eval/src/data/ratings/user_queries.txt b/gnqa/paper1_eval/src/data/ratings/user_queries.txt new file mode 100644 index 0000000..4b280a1 --- /dev/null +++ b/gnqa/paper1_eval/src/data/ratings/user_queries.txt @@ -0,0 +1,221 @@ +GENERAL +Create a how-to guide for genetic sequencing. +Create a how-to guide for GWAS analysis? +What is the significance of the length of telomeres? +Create a guide for genetic sequencing +Create a how-to guide for genetic sequencing. +Explain the process of DNA replication and how it ensures accurate copying of genetic information during cell division. +Explain the process of finding a genetic marker followed by a quantitative trait loci. +For text and biological resources, do you mean add some books (on biology stuff) or/and web resources (as ensembl) on your system? +How can I add a new species to the GeneNetwork database? +How does epigenetics inluence gene expression without changing the underlying DNA sequence? +How does recombination work in human centromeres? +How would one extract the DNA, from say, flora or fauna? +What is the difference between QTL mapping and GWAS? +What is the most cited environmental factor for the onset of asthma? +what are the bioinformatics tools for QTLs analysis? +what are the statistical approaches for qtls analysis? +what is bioinformatics +What is apoptosis? +GENERAL FOR STUDY +How do I determine which gene in my QTL is causal for the trait? +Why do males have two Y chromosomes and females only one? +what type of dataset is useful for qtl mapping analysis in genenetwork2? +What are the ethical considerations surrounding prenatal genetic testing and the selective termination of pregnancies based on genetic factors? +What are the potential benefits and risks associated with gene editing technologies like CRISPR-Cas9? +What about recombination in human centromeres? +What about recombination in the human genome? +How can I add a new species to the GeneNetwork database? +Describe the role of mitochondrial DNA in heredity and how it differs from nuclear DNA. +what is ensembl? +MyQ -- Create a how to guide for genetic sequencing +MyQ -- What is the significance of the length of telomeres? +MyQ -- Once a sperm combines with an egg, what determines how traits are passed onto the resulting lifeform? +MyQ -- Why is genetic tracing matrilineal rather than patrilineal? +MyQ -- How does one tell the difference between X and Y DNA, with respect to DNA tracing and determining QTLs? +MyQ -- Describe the genotypes related to Alzheimers and dementia which have commonalities with those for aging. +MyQ -- List as many studies as you can that include rapamycin. +MyQ -- What are the genetic bases for the varying efficacy of diabetes treatments among individuals? +AGING +Which mouse genes have been associated with longevity? +Is lifespan determined by genetics? +Is there a direct association between aging and susceptibility to having diabetes? +Which genes are associated with aging in human +What genetic factors influence aging in humans? +Why is it so diffuclut to map gene loci that control aging in humans? +what causes the aging process +what genes are associated with aging? +what genetic factor are associated with aging +which genes are involved in the aging process +DIABETES +what genes are associated with diabetes? +nutrition is a factor for diabetes. construct an abstract about how can genomics be use to better understand nutritional factors of diabets +nutrition is a factor for diabetes. how can genomics be use to better understand nutritional factors of diabets +Is any of the genes SH2B3, IFIH1 or ERBB3 related to diabetes? +How does genetics influence the emergency of diabetes? +How is gene expression in the liver affected by diabetes? +How many types of diabetes exist? + + + +ADDING ALL June 26th 2024 + +Flavia: + - 26681F93BA485656CF56BD71682E7C77: Which database can I use for genetic, genomic, phenotype, and disease-related data generated from rat research? + - What resources can I use to do pathway analyses? + - What is ensembl? + 92B99DB2F9F6265E7582EB8320E742D6: Which genes give a predisposition to developing T1D? +"genetics", +"genetics", +"genetics", +"List as many studies as you can that include rapamycin.", +"genetics", +"what is bioinformatics", +"genetics", +"genetics", +"which genes are involved in the aging process", +"what causes the aging process", +"which genes are involved in the aging process", +"List as many studies as you can that include rapamycin.", +"List as many studies as you can that include rapamycin.", +"List as many studies as you can that include rapamycin.", +"genetics", +"which genes are involved in aging", +"Create a how-to guide for genetic sequencing.", +"What is the significance of the length of telomeres?", +"Once a sperm combines with an egg, what determines how traits are passed onto the resulting lifeform?", +"Why is genetic tracing matrilineal rather than patrilineal?", +"How does one tell the difference between X and Y DNA, with respect to DNA tracing and determining QTLs?", +"Explain Protective Genetic Factors Against Diabetes in Elderly Populations", +"what genes are involved in the aging process", +"Explain Effect of Lifestyle Modifications on Aging-Associated Diabetes Risk", +"Explain The Role of Longevity Genes in Protecting Against Diabetes", +"What are the types of diabetes" + +"What are the genetic bases for the varying efficacy of diabetes treatments among individuals?", +"List as many studies as you can that include rapamycin.", +"Why is it so diffuclut to map gene loci that control aging in humans?", +"What is apoptosis?", +"What is the most cited environmental factor for the onset of asthma?", +"How would one extract the DNA, from say, flora or fauna?" + +"What are the potential benefits and risk associated with gene editing technologies like CRISPRR-Cas9?", +"How does epigenetics inluence gene expression without changing the underlying DNA sequence?", +"Describe the role of mitochondrial DNA in heredity and how it differs from nuclear DNA.", +"What are the ethical considerations surrounding prenatal genetic testing and the selective termination of pregnancies based on genetic factors?", +"Create a how-to guide for genetic sequencing.", +"What is the significance of the length of telomeres?", +"Once a sperm combines with an egg, what determines how traits are passed onto the resulting lifeform?", +"Why is genetic tracing matrilineal rather than patrilineal?", +"Explain the process of DNA replication and how it ensures accurate copying of genetic information during cell division.", +"What are the potential benefits and risks associated with gene editing technologies like CRISPR-Cas9?", +"Create a how-to guide for genetic sequencing.", +"What is the significance of the length of telomeres?", +"Once a sperm combines with an egg, what determines how traits are passed onto the resulting lifeform?", +"Why is genetic tracing matrilineal rather than patrilineal?", +"How does one tell the difference between X and Y DNA, with repsect to DNA tracing and determining QTLs?", +"For text and biological resources, do you mean add some books (on biology stuff) or/and web resources (as ensembl) on your system?", +"what is ensembl?" + +"Explain the process of finding a genetic marker followed by a quantitative trait loci.", +"Describe the genotypes related to Alzheimers and dementia which have commonalities with those for aging.", +"Describe the genotypes related to Alzheimer's and dementia which have commonalities with those for aging.", +"What about recombination in human centromeres?", +"What about recombination in human centromeres?", +"How does recombination work in human centromeres?", +"How many types of diabetes exist?", +"What about recombination in the human genome?" + + +"Create a how to guide for genetic sequencing ", +"What is the significance of the length of telomeres? ", +"Once a sperm combines with an egg, what determines how traits are passed on to the resulting lifeform? ", +"Why is genetic tracing matrilineal rather than patrilineal? ", +"How does one tell the difference between X and Y DNA, with respect to DNA tracing and determining QTLs?", +"what type of dataset is useful for qtl mapping analysis in genenetwork2? ", +"What genetic factors influence aging in humans? ", +"Is there a direct association between aging and susceptibility to having diabetes?", +"How does genetics influence the emergency of diabetes? " + +"Create a how-to guide for genetic sequencing.", +"What is the significance of the length of telomeres?", +"Once a sperm combines with an egg, what determines how traits are passed onto the resulting lifeform?", +"Why is genetic tracing matrilineal rather than patrilineal?", +"How does one tell the difference between X and Y DNA, with respect to DNA tracing and determining QTLs?", +"what genes are associated with diabetes?", +"what genes are associated with aging?", +"what are the bioinformatics tools for QTLs analysis?", +"what are the statistical approaches for qtls analysis?", +"Create a how-to guide for GWAS analysis?" + +"Once a sperm combines with an egg, what determines how traits are passed onto the resulting lifeform?", +"Which genes are associated with aging in human ", +"Create a how-to guide for genetic sequencing", +"Create a guide for genetic sequencing", +"Once a sperm combines with an egg, what determines how traits are passed onto the resulting lifeform?", +"Why is genetic tracing matrilineal rather than patrilineal?", +"How does one tell the difference between X and Y DNA, with respect to DNA tracing and determining QTLs" + + +"Create a how-to guide for genetic sequencing.", +"What is the significance of the length of telomeres?", +"How does one tell the difference between X and Y DNA, with respect to DNA tracing and determining QTLs?", +"What is the difference between QTL mapping and GWAS?", +"How do I determine which gene in my QTL is causal for the trait?", +"Which mouse genes have been associated with longevity?", +"How is gene expression in the liver affected by diabetes?", +"Why do males have two Y chromosomes and females only one?" + +" Create a how-to guide for genetic sequencing", +" Create a how-to guide for genetic sequencing.", +" What is the significance of the length of telomeres?" + +"How can I add a new species to the GeneNetwork database?", +"Is any of the genes SH2B3, IFIH1 or ERBB3 related to diabetes?" + +"what genetic factor are associated with aging", +"nutrition is a factor for diabetes. how can genomics be use to better understand nutritional factors of diabets", +"nutrition is a factor for diabetes. construct an abstract about how can genomics be use to better understand nutritional factors of diabets" + + +"which genes are typically associated with diabetes in QTL analyses?", +"which genes are typically associated with early aging?", +"How do I generate a linkage or association mapping study in mice to understand aging?", +"Is the gene TCF7L2 involved in diabetes?", +"In which diseases is the gene TCF7L2 involved?", +"what are confounding factors in diabetes?" + + +"What is the significance of the length of telomeres?", +"Can you explain the difference between sequencing with short reads vs long reads? Please make you answer accessible to a non-expert.", +"Can you explain why using a pangenome-based reference might be more useful than simply using a single linear reference? Please make you answer accessible to a non-expert.", +"Is all genetic regulation done through DNA (e.g., prompters, repressors, activators) or are there other forms of genetic regulation? Please make you answer accessible to a non-expert.", +"is there a specific genetic variation that can cause someone to live longer? please make your answer accessible to a non-expert" + + +"How is the immune system related to diabetes?", +"What are the genomic variants associated with immune system components and diabetes?", +"What is the role of the immune system in the metabolomics of diabetes and associated conditions?", +"What are the different relationship between traits?", +"Can landscape of QTL and GWAS hits be used to find relationships between traits ?", +"Can the landscape of QTL and GWAS hits be used to dissect the role of immune system in diabetes and complications?" + +"What causes diabetes?", +"Define dyslipidemia.", +"Does cycling reduce risk of diabetes?", +"What is cytochrome?" + +"What is GeneNetwork and how does it relate to aging research?", +"How can GeneNetwork assist in identifying genetic factors involved in diabetes?", +"What specific tools within GeneNetwork are most useful for diabetes research, and how are they applied?", +"What role does insulin play in the regulation of blood glucose levels?", +" How does aging affect the risk of developing type 2 diabetes?", +"Can lifestyle changes reverse type 2 diabetes?" + +"how does environment influence fertilisation", +"how does diet impact someone's height", +"which animal has the same number of chromosomes as human", +"what's ensures brains work", +"how do our brains maintain emotions", +"what hormones do our brains release during stressful experiences?", +"what is the use of corticosterone?" |