two version of R2R are here HEAD master

1 files changed, 337 insertions, 0 deletions

diff --git a/.venv/lib/python3.12/site-packages/pip/_internal/utils/unpacking.py b/.venv/lib/python3.12/site-packages/pip/_internal/utils/unpacking.py
new file mode 100644
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+++ b/.venv/lib/python3.12/site-packages/pip/_internal/utils/unpacking.py
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+"""Utilities related archives.
+"""
+
+import logging
+import os
+import shutil
+import stat
+import sys
+import tarfile
+import zipfile
+from typing import Iterable, List, Optional
+from zipfile import ZipInfo
+
+from pip._internal.exceptions import InstallationError
+from pip._internal.utils.filetypes import (
+    BZ2_EXTENSIONS,
+    TAR_EXTENSIONS,
+    XZ_EXTENSIONS,
+    ZIP_EXTENSIONS,
+)
+from pip._internal.utils.misc import ensure_dir
+
+logger = logging.getLogger(__name__)
+
+
+SUPPORTED_EXTENSIONS = ZIP_EXTENSIONS + TAR_EXTENSIONS
+
+try:
+    import bz2  # noqa
+
+    SUPPORTED_EXTENSIONS += BZ2_EXTENSIONS
+except ImportError:
+    logger.debug("bz2 module is not available")
+
+try:
+    # Only for Python 3.3+
+    import lzma  # noqa
+
+    SUPPORTED_EXTENSIONS += XZ_EXTENSIONS
+except ImportError:
+    logger.debug("lzma module is not available")
+
+
+def current_umask() -> int:
+    """Get the current umask which involves having to set it temporarily."""
+    mask = os.umask(0)
+    os.umask(mask)
+    return mask
+
+
+def split_leading_dir(path: str) -> List[str]:
+    path = path.lstrip("/").lstrip("\\")
+    if "/" in path and (
+        ("\\" in path and path.find("/") < path.find("\\")) or "\\" not in path
+    ):
+        return path.split("/", 1)
+    elif "\\" in path:
+        return path.split("\\", 1)
+    else:
+        return [path, ""]
+
+
+def has_leading_dir(paths: Iterable[str]) -> bool:
+    """Returns true if all the paths have the same leading path name
+    (i.e., everything is in one subdirectory in an archive)"""
+    common_prefix = None
+    for path in paths:
+        prefix, rest = split_leading_dir(path)
+        if not prefix:
+            return False
+        elif common_prefix is None:
+            common_prefix = prefix
+        elif prefix != common_prefix:
+            return False
+    return True
+
+
+def is_within_directory(directory: str, target: str) -> bool:
+    """
+    Return true if the absolute path of target is within the directory
+    """
+    abs_directory = os.path.abspath(directory)
+    abs_target = os.path.abspath(target)
+
+    prefix = os.path.commonprefix([abs_directory, abs_target])
+    return prefix == abs_directory
+
+
+def _get_default_mode_plus_executable() -> int:
+    return 0o777 & ~current_umask() | 0o111
+
+
+def set_extracted_file_to_default_mode_plus_executable(path: str) -> None:
+    """
+    Make file present at path have execute for user/group/world
+    (chmod +x) is no-op on windows per python docs
+    """
+    os.chmod(path, _get_default_mode_plus_executable())
+
+
+def zip_item_is_executable(info: ZipInfo) -> bool:
+    mode = info.external_attr >> 16
+    # if mode and regular file and any execute permissions for
+    # user/group/world?
+    return bool(mode and stat.S_ISREG(mode) and mode & 0o111)
+
+
+def unzip_file(filename: str, location: str, flatten: bool = True) -> None:
+    """
+    Unzip the file (with path `filename`) to the destination `location`.  All
+    files are written based on system defaults and umask (i.e. permissions are
+    not preserved), except that regular file members with any execute
+    permissions (user, group, or world) have "chmod +x" applied after being
+    written. Note that for windows, any execute changes using os.chmod are
+    no-ops per the python docs.
+    """
+    ensure_dir(location)
+    zipfp = open(filename, "rb")
+    try:
+        zip = zipfile.ZipFile(zipfp, allowZip64=True)
+        leading = has_leading_dir(zip.namelist()) and flatten
+        for info in zip.infolist():
+            name = info.filename
+            fn = name
+            if leading:
+                fn = split_leading_dir(name)[1]
+            fn = os.path.join(location, fn)
+            dir = os.path.dirname(fn)
+            if not is_within_directory(location, fn):
+                message = (
+                    "The zip file ({}) has a file ({}) trying to install "
+                    "outside target directory ({})"
+                )
+                raise InstallationError(message.format(filename, fn, location))
+            if fn.endswith("/") or fn.endswith("\\"):
+                # A directory
+                ensure_dir(fn)
+            else:
+                ensure_dir(dir)
+                # Don't use read() to avoid allocating an arbitrarily large
+                # chunk of memory for the file's content
+                fp = zip.open(name)
+                try:
+                    with open(fn, "wb") as destfp:
+                        shutil.copyfileobj(fp, destfp)
+                finally:
+                    fp.close()
+                    if zip_item_is_executable(info):
+                        set_extracted_file_to_default_mode_plus_executable(fn)
+    finally:
+        zipfp.close()
+
+
+def untar_file(filename: str, location: str) -> None:
+    """
+    Untar the file (with path `filename`) to the destination `location`.
+    All files are written based on system defaults and umask (i.e. permissions
+    are not preserved), except that regular file members with any execute
+    permissions (user, group, or world) have "chmod +x" applied on top of the
+    default.  Note that for windows, any execute changes using os.chmod are
+    no-ops per the python docs.
+    """
+    ensure_dir(location)
+    if filename.lower().endswith(".gz") or filename.lower().endswith(".tgz"):
+        mode = "r:gz"
+    elif filename.lower().endswith(BZ2_EXTENSIONS):
+        mode = "r:bz2"
+    elif filename.lower().endswith(XZ_EXTENSIONS):
+        mode = "r:xz"
+    elif filename.lower().endswith(".tar"):
+        mode = "r"
+    else:
+        logger.warning(
+            "Cannot determine compression type for file %s",
+            filename,
+        )
+        mode = "r:*"
+
+    tar = tarfile.open(filename, mode, encoding="utf-8")  # type: ignore
+    try:
+        leading = has_leading_dir([member.name for member in tar.getmembers()])
+
+        # PEP 706 added `tarfile.data_filter`, and made some other changes to
+        # Python's tarfile module (see below). The features were backported to
+        # security releases.
+        try:
+            data_filter = tarfile.data_filter
+        except AttributeError:
+            _untar_without_filter(filename, location, tar, leading)
+        else:
+            default_mode_plus_executable = _get_default_mode_plus_executable()
+
+            if leading:
+                # Strip the leading directory from all files in the archive,
+                # including hardlink targets (which are relative to the
+                # unpack location).
+                for member in tar.getmembers():
+                    name_lead, name_rest = split_leading_dir(member.name)
+                    member.name = name_rest
+                    if member.islnk():
+                        lnk_lead, lnk_rest = split_leading_dir(member.linkname)
+                        if lnk_lead == name_lead:
+                            member.linkname = lnk_rest
+
+            def pip_filter(member: tarfile.TarInfo, path: str) -> tarfile.TarInfo:
+                orig_mode = member.mode
+                try:
+                    try:
+                        member = data_filter(member, location)
+                    except tarfile.LinkOutsideDestinationError:
+                        if sys.version_info[:3] in {
+                            (3, 8, 17),
+                            (3, 9, 17),
+                            (3, 10, 12),
+                            (3, 11, 4),
+                        }:
+                            # The tarfile filter in specific Python versions
+                            # raises LinkOutsideDestinationError on valid input
+                            # (https://github.com/python/cpython/issues/107845)
+                            # Ignore the error there, but do use the
+                            # more lax `tar_filter`
+                            member = tarfile.tar_filter(member, location)
+                        else:
+                            raise
+                except tarfile.TarError as exc:
+                    message = "Invalid member in the tar file {}: {}"
+                    # Filter error messages mention the member name.
+                    # No need to add it here.
+                    raise InstallationError(
+                        message.format(
+                            filename,
+                            exc,
+                        )
+                    )
+                if member.isfile() and orig_mode & 0o111:
+                    member.mode = default_mode_plus_executable
+                else:
+                    # See PEP 706 note above.
+                    # The PEP changed this from `int` to `Optional[int]`,
+                    # where None means "use the default". Mypy doesn't
+                    # know this yet.
+                    member.mode = None  # type: ignore [assignment]
+                return member
+
+            tar.extractall(location, filter=pip_filter)
+
+    finally:
+        tar.close()
+
+
+def _untar_without_filter(
+    filename: str,
+    location: str,
+    tar: tarfile.TarFile,
+    leading: bool,
+) -> None:
+    """Fallback for Python without tarfile.data_filter"""
+    for member in tar.getmembers():
+        fn = member.name
+        if leading:
+            fn = split_leading_dir(fn)[1]
+        path = os.path.join(location, fn)
+        if not is_within_directory(location, path):
+            message = (
+                "The tar file ({}) has a file ({}) trying to install "
+                "outside target directory ({})"
+            )
+            raise InstallationError(message.format(filename, path, location))
+        if member.isdir():
+            ensure_dir(path)
+        elif member.issym():
+            try:
+                tar._extract_member(member, path)
+            except Exception as exc:
+                # Some corrupt tar files seem to produce this
+                # (specifically bad symlinks)
+                logger.warning(
+                    "In the tar file %s the member %s is invalid: %s",
+                    filename,
+                    member.name,
+                    exc,
+                )
+                continue
+        else:
+            try:
+                fp = tar.extractfile(member)
+            except (KeyError, AttributeError) as exc:
+                # Some corrupt tar files seem to produce this
+                # (specifically bad symlinks)
+                logger.warning(
+                    "In the tar file %s the member %s is invalid: %s",
+                    filename,
+                    member.name,
+                    exc,
+                )
+                continue
+            ensure_dir(os.path.dirname(path))
+            assert fp is not None
+            with open(path, "wb") as destfp:
+                shutil.copyfileobj(fp, destfp)
+            fp.close()
+            # Update the timestamp (useful for cython compiled files)
+            tar.utime(member, path)
+            # member have any execute permissions for user/group/world?
+            if member.mode & 0o111:
+                set_extracted_file_to_default_mode_plus_executable(path)
+
+
+def unpack_file(
+    filename: str,
+    location: str,
+    content_type: Optional[str] = None,
+) -> None:
+    filename = os.path.realpath(filename)
+    if (
+        content_type == "application/zip"
+        or filename.lower().endswith(ZIP_EXTENSIONS)
+        or zipfile.is_zipfile(filename)
+    ):
+        unzip_file(filename, location, flatten=not filename.endswith(".whl"))
+    elif (
+        content_type == "application/x-gzip"
+        or tarfile.is_tarfile(filename)
+        or filename.lower().endswith(TAR_EXTENSIONS + BZ2_EXTENSIONS + XZ_EXTENSIONS)
+    ):
+        untar_file(filename, location)
+    else:
+        # FIXME: handle?
+        # FIXME: magic signatures?
+        logger.critical(
+            "Cannot unpack file %s (downloaded from %s, content-type: %s); "
+            "cannot detect archive format",
+            filename,
+            location,
+            content_type,
+        )
+        raise InstallationError(f"Cannot determine archive format of {location}")