two version of R2R are here HEAD master

3 files changed, 240 insertions, 0 deletions

diff --git a/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/extending.pyx b/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/extending.pyx
new file mode 100644
index 00000000..30efd744
--- /dev/null
+++ b/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/extending.pyx
@@ -0,0 +1,78 @@
+#!/usr/bin/env python3
+#cython: language_level=3
+
+from libc.stdint cimport uint32_t
+from cpython.pycapsule cimport PyCapsule_IsValid, PyCapsule_GetPointer
+
+import numpy as np
+cimport numpy as np
+cimport cython
+
+from numpy.random cimport bitgen_t
+from numpy.random import PCG64
+
+np.import_array()
+
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+def uniform_mean(Py_ssize_t n):
+    cdef Py_ssize_t i
+    cdef bitgen_t *rng
+    cdef const char *capsule_name = "BitGenerator"
+    cdef double[::1] random_values
+    cdef np.ndarray randoms
+
+    x = PCG64()
+    capsule = x.capsule
+    if not PyCapsule_IsValid(capsule, capsule_name):
+        raise ValueError("Invalid pointer to anon_func_state")
+    rng = <bitgen_t *> PyCapsule_GetPointer(capsule, capsule_name)
+    random_values = np.empty(n)
+    # Best practice is to acquire the lock whenever generating random values.
+    # This prevents other threads from modifying the state. Acquiring the lock
+    # is only necessary if the GIL is also released, as in this example.
+    with x.lock, nogil:
+        for i in range(n):
+            random_values[i] = rng.next_double(rng.state)
+    randoms = np.asarray(random_values)
+    return randoms.mean()
+
+
+# This function is declared nogil so it can be used without the GIL below
+cdef uint32_t bounded_uint(uint32_t lb, uint32_t ub, bitgen_t *rng) nogil:
+    cdef uint32_t mask, delta, val
+    mask = delta = ub - lb
+    mask |= mask >> 1
+    mask |= mask >> 2
+    mask |= mask >> 4
+    mask |= mask >> 8
+    mask |= mask >> 16
+
+    val = rng.next_uint32(rng.state) & mask
+    while val > delta:
+        val = rng.next_uint32(rng.state) & mask
+
+    return lb + val
+
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+def bounded_uints(uint32_t lb, uint32_t ub, Py_ssize_t n):
+    cdef Py_ssize_t i
+    cdef bitgen_t *rng
+    cdef uint32_t[::1] out
+    cdef const char *capsule_name = "BitGenerator"
+
+    x = PCG64()
+    out = np.empty(n, dtype=np.uint32)
+    capsule = x.capsule
+
+    if not PyCapsule_IsValid(capsule, capsule_name):
+        raise ValueError("Invalid pointer to anon_func_state")
+    rng = <bitgen_t *>PyCapsule_GetPointer(capsule, capsule_name)
+
+    with x.lock, nogil:
+        for i in range(n):
+            out[i] = bounded_uint(lb, ub, rng)
+    return np.asarray(out)
diff --git a/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/extending_distributions.pyx b/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/extending_distributions.pyx
new file mode 100644
index 00000000..d908e92d
--- /dev/null
+++ b/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/extending_distributions.pyx
@@ -0,0 +1,117 @@
+#!/usr/bin/env python3
+#cython: language_level=3
+"""
+This file shows how the to use a BitGenerator to create a distribution.
+"""
+import numpy as np
+cimport numpy as np
+cimport cython
+from cpython.pycapsule cimport PyCapsule_IsValid, PyCapsule_GetPointer
+from libc.stdint cimport uint16_t, uint64_t
+from numpy.random cimport bitgen_t
+from numpy.random import PCG64
+from numpy.random.c_distributions cimport (
+      random_standard_uniform_fill, random_standard_uniform_fill_f)
+
+
+@cython.boundscheck(False)
+@cython.wraparound(False)
+def uniforms(Py_ssize_t n):
+    """
+    Create an array of `n` uniformly distributed doubles.
+    A 'real' distribution would want to process the values into
+    some non-uniform distribution
+    """
+    cdef Py_ssize_t i
+    cdef bitgen_t *rng
+    cdef const char *capsule_name = "BitGenerator"
+    cdef double[::1] random_values
+
+    x = PCG64()
+    capsule = x.capsule
+    # Optional check that the capsule if from a BitGenerator
+    if not PyCapsule_IsValid(capsule, capsule_name):
+        raise ValueError("Invalid pointer to anon_func_state")
+    # Cast the pointer
+    rng = <bitgen_t *> PyCapsule_GetPointer(capsule, capsule_name)
+    random_values = np.empty(n, dtype='float64')
+    with x.lock, nogil:
+        for i in range(n):
+            # Call the function
+            random_values[i] = rng.next_double(rng.state)
+    randoms = np.asarray(random_values)
+
+    return randoms
+
+# cython example 2
+@cython.boundscheck(False)
+@cython.wraparound(False)
+def uint10_uniforms(Py_ssize_t n):
+    """Uniform 10 bit integers stored as 16-bit unsigned integers"""
+    cdef Py_ssize_t i
+    cdef bitgen_t *rng
+    cdef const char *capsule_name = "BitGenerator"
+    cdef uint16_t[::1] random_values
+    cdef int bits_remaining
+    cdef int width = 10
+    cdef uint64_t buff, mask = 0x3FF
+
+    x = PCG64()
+    capsule = x.capsule
+    if not PyCapsule_IsValid(capsule, capsule_name):
+        raise ValueError("Invalid pointer to anon_func_state")
+    rng = <bitgen_t *> PyCapsule_GetPointer(capsule, capsule_name)
+    random_values = np.empty(n, dtype='uint16')
+    # Best practice is to release GIL and acquire the lock
+    bits_remaining = 0
+    with x.lock, nogil:
+        for i in range(n):
+            if bits_remaining < width:
+                buff = rng.next_uint64(rng.state)
+            random_values[i] = buff & mask
+            buff >>= width
+
+    randoms = np.asarray(random_values)
+    return randoms
+
+# cython example 3
+def uniforms_ex(bit_generator, Py_ssize_t n, dtype=np.float64):
+    """
+    Create an array of `n` uniformly distributed doubles via a "fill" function.
+
+    A 'real' distribution would want to process the values into
+    some non-uniform distribution
+
+    Parameters
+    ----------
+    bit_generator: BitGenerator instance
+    n: int
+        Output vector length
+    dtype: {str, dtype}, optional
+        Desired dtype, either 'd' (or 'float64') or 'f' (or 'float32'). The
+        default dtype value is 'd'
+    """
+    cdef Py_ssize_t i
+    cdef bitgen_t *rng
+    cdef const char *capsule_name = "BitGenerator"
+    cdef np.ndarray randoms
+
+    capsule = bit_generator.capsule
+    # Optional check that the capsule if from a BitGenerator
+    if not PyCapsule_IsValid(capsule, capsule_name):
+        raise ValueError("Invalid pointer to anon_func_state")
+    # Cast the pointer
+    rng = <bitgen_t *> PyCapsule_GetPointer(capsule, capsule_name)
+
+    _dtype = np.dtype(dtype)
+    randoms = np.empty(n, dtype=_dtype)
+    if _dtype == np.float32:
+        with bit_generator.lock:
+            random_standard_uniform_fill_f(rng, n, <float*>np.PyArray_DATA(randoms))
+    elif _dtype == np.float64:
+        with bit_generator.lock:
+            random_standard_uniform_fill(rng, n, <double*>np.PyArray_DATA(randoms))
+    else:
+        raise TypeError('Unsupported dtype %r for random' % _dtype)
+    return randoms
+
diff --git a/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/meson.build b/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/meson.build
new file mode 100644
index 00000000..c00837d4
--- /dev/null
+++ b/.venv/lib/python3.12/site-packages/numpy/random/_examples/cython/meson.build
@@ -0,0 +1,45 @@
+project('random-build-examples', 'c', 'cpp', 'cython')
+
+py_mod = import('python')
+py3 = py_mod.find_installation(pure: false)
+
+cc = meson.get_compiler('c')
+cy = meson.get_compiler('cython')
+
+if not cy.version().version_compare('>=0.29.35')
+  error('tests requires Cython >= 0.29.35')
+endif
+
+_numpy_abs = run_command(py3, ['-c',
+               'import os; os.chdir(".."); import numpy; print(os.path.abspath(numpy.get_include() + "../../.."))'],
+                         check: true).stdout().strip()
+
+npymath_path = _numpy_abs / 'core' / 'lib'
+npy_include_path = _numpy_abs / 'core' / 'include'
+npyrandom_path = _numpy_abs / 'random' / 'lib'
+npymath_lib = cc.find_library('npymath', dirs: npymath_path)
+npyrandom_lib = cc.find_library('npyrandom', dirs: npyrandom_path)
+
+py3.extension_module(
+    'extending_distributions',
+    'extending_distributions.pyx',
+    install: false,
+    include_directories: [npy_include_path],
+    dependencies: [npyrandom_lib, npymath_lib],
+)
+py3.extension_module(
+    'extending',
+    'extending.pyx',
+    install: false,
+    include_directories: [npy_include_path],
+    dependencies: [npyrandom_lib, npymath_lib],
+)
+py3.extension_module(
+    'extending_cpp',
+    'extending_distributions.pyx',
+    install: false,
+    override_options : ['cython_language=cpp'],
+    cython_args: ['--module-name', 'extending_cpp'],
+    include_directories: [npy_include_path],
+    dependencies: [npyrandom_lib, npymath_lib],
+)