two version of R2R are here HEAD master

1 files changed, 288 insertions, 0 deletions

diff --git a/.venv/lib/python3.12/site-packages/numpy/ma/testutils.py b/.venv/lib/python3.12/site-packages/numpy/ma/testutils.py
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+"""Miscellaneous functions for testing masked arrays and subclasses
+
+:author: Pierre Gerard-Marchant
+:contact: pierregm_at_uga_dot_edu
+:version: $Id: testutils.py 3529 2007-11-13 08:01:14Z jarrod.millman $
+
+"""
+import operator
+
+import numpy as np
+from numpy import ndarray, float_
+import numpy.core.umath as umath
+import numpy.testing
+from numpy.testing import (
+    assert_, assert_allclose, assert_array_almost_equal_nulp,
+    assert_raises, build_err_msg
+    )
+from .core import mask_or, getmask, masked_array, nomask, masked, filled
+
+__all__masked = [
+    'almost', 'approx', 'assert_almost_equal', 'assert_array_almost_equal',
+    'assert_array_approx_equal', 'assert_array_compare',
+    'assert_array_equal', 'assert_array_less', 'assert_close',
+    'assert_equal', 'assert_equal_records', 'assert_mask_equal',
+    'assert_not_equal', 'fail_if_array_equal',
+    ]
+
+# Include some normal test functions to avoid breaking other projects who
+# have mistakenly included them from this file. SciPy is one. That is
+# unfortunate, as some of these functions are not intended to work with
+# masked arrays. But there was no way to tell before.
+from unittest import TestCase
+__some__from_testing = [
+    'TestCase', 'assert_', 'assert_allclose', 'assert_array_almost_equal_nulp',
+    'assert_raises'
+    ]
+
+__all__ = __all__masked + __some__from_testing
+
+
+def approx(a, b, fill_value=True, rtol=1e-5, atol=1e-8):
+    """
+    Returns true if all components of a and b are equal to given tolerances.
+
+    If fill_value is True, masked values considered equal. Otherwise,
+    masked values are considered unequal.  The relative error rtol should
+    be positive and << 1.0 The absolute error atol comes into play for
+    those elements of b that are very small or zero; it says how small a
+    must be also.
+
+    """
+    m = mask_or(getmask(a), getmask(b))
+    d1 = filled(a)
+    d2 = filled(b)
+    if d1.dtype.char == "O" or d2.dtype.char == "O":
+        return np.equal(d1, d2).ravel()
+    x = filled(masked_array(d1, copy=False, mask=m), fill_value).astype(float_)
+    y = filled(masked_array(d2, copy=False, mask=m), 1).astype(float_)
+    d = np.less_equal(umath.absolute(x - y), atol + rtol * umath.absolute(y))
+    return d.ravel()
+
+
+def almost(a, b, decimal=6, fill_value=True):
+    """
+    Returns True if a and b are equal up to decimal places.
+
+    If fill_value is True, masked values considered equal. Otherwise,
+    masked values are considered unequal.
+
+    """
+    m = mask_or(getmask(a), getmask(b))
+    d1 = filled(a)
+    d2 = filled(b)
+    if d1.dtype.char == "O" or d2.dtype.char == "O":
+        return np.equal(d1, d2).ravel()
+    x = filled(masked_array(d1, copy=False, mask=m), fill_value).astype(float_)
+    y = filled(masked_array(d2, copy=False, mask=m), 1).astype(float_)
+    d = np.around(np.abs(x - y), decimal) <= 10.0 ** (-decimal)
+    return d.ravel()
+
+
+def _assert_equal_on_sequences(actual, desired, err_msg=''):
+    """
+    Asserts the equality of two non-array sequences.
+
+    """
+    assert_equal(len(actual), len(desired), err_msg)
+    for k in range(len(desired)):
+        assert_equal(actual[k], desired[k], f'item={k!r}\n{err_msg}')
+    return
+
+
+def assert_equal_records(a, b):
+    """
+    Asserts that two records are equal.
+
+    Pretty crude for now.
+
+    """
+    assert_equal(a.dtype, b.dtype)
+    for f in a.dtype.names:
+        (af, bf) = (operator.getitem(a, f), operator.getitem(b, f))
+        if not (af is masked) and not (bf is masked):
+            assert_equal(operator.getitem(a, f), operator.getitem(b, f))
+    return
+
+
+def assert_equal(actual, desired, err_msg=''):
+    """
+    Asserts that two items are equal.
+
+    """
+    # Case #1: dictionary .....
+    if isinstance(desired, dict):
+        if not isinstance(actual, dict):
+            raise AssertionError(repr(type(actual)))
+        assert_equal(len(actual), len(desired), err_msg)
+        for k, i in desired.items():
+            if k not in actual:
+                raise AssertionError(f"{k} not in {actual}")
+            assert_equal(actual[k], desired[k], f'key={k!r}\n{err_msg}')
+        return
+    # Case #2: lists .....
+    if isinstance(desired, (list, tuple)) and isinstance(actual, (list, tuple)):
+        return _assert_equal_on_sequences(actual, desired, err_msg='')
+    if not (isinstance(actual, ndarray) or isinstance(desired, ndarray)):
+        msg = build_err_msg([actual, desired], err_msg,)
+        if not desired == actual:
+            raise AssertionError(msg)
+        return
+    # Case #4. arrays or equivalent
+    if ((actual is masked) and not (desired is masked)) or \
+            ((desired is masked) and not (actual is masked)):
+        msg = build_err_msg([actual, desired],
+                            err_msg, header='', names=('x', 'y'))
+        raise ValueError(msg)
+    actual = np.asanyarray(actual)
+    desired = np.asanyarray(desired)
+    (actual_dtype, desired_dtype) = (actual.dtype, desired.dtype)
+    if actual_dtype.char == "S" and desired_dtype.char == "S":
+        return _assert_equal_on_sequences(actual.tolist(),
+                                          desired.tolist(),
+                                          err_msg='')
+    return assert_array_equal(actual, desired, err_msg)
+
+
+def fail_if_equal(actual, desired, err_msg='',):
+    """
+    Raises an assertion error if two items are equal.
+
+    """
+    if isinstance(desired, dict):
+        if not isinstance(actual, dict):
+            raise AssertionError(repr(type(actual)))
+        fail_if_equal(len(actual), len(desired), err_msg)
+        for k, i in desired.items():
+            if k not in actual:
+                raise AssertionError(repr(k))
+            fail_if_equal(actual[k], desired[k], f'key={k!r}\n{err_msg}')
+        return
+    if isinstance(desired, (list, tuple)) and isinstance(actual, (list, tuple)):
+        fail_if_equal(len(actual), len(desired), err_msg)
+        for k in range(len(desired)):
+            fail_if_equal(actual[k], desired[k], f'item={k!r}\n{err_msg}')
+        return
+    if isinstance(actual, np.ndarray) or isinstance(desired, np.ndarray):
+        return fail_if_array_equal(actual, desired, err_msg)
+    msg = build_err_msg([actual, desired], err_msg)
+    if not desired != actual:
+        raise AssertionError(msg)
+
+
+assert_not_equal = fail_if_equal
+
+
+def assert_almost_equal(actual, desired, decimal=7, err_msg='', verbose=True):
+    """
+    Asserts that two items are almost equal.
+
+    The test is equivalent to abs(desired-actual) < 0.5 * 10**(-decimal).
+
+    """
+    if isinstance(actual, np.ndarray) or isinstance(desired, np.ndarray):
+        return assert_array_almost_equal(actual, desired, decimal=decimal,
+                                         err_msg=err_msg, verbose=verbose)
+    msg = build_err_msg([actual, desired],
+                        err_msg=err_msg, verbose=verbose)
+    if not round(abs(desired - actual), decimal) == 0:
+        raise AssertionError(msg)
+
+
+assert_close = assert_almost_equal
+
+
+def assert_array_compare(comparison, x, y, err_msg='', verbose=True, header='',
+                         fill_value=True):
+    """
+    Asserts that comparison between two masked arrays is satisfied.
+
+    The comparison is elementwise.
+
+    """
+    # Allocate a common mask and refill
+    m = mask_or(getmask(x), getmask(y))
+    x = masked_array(x, copy=False, mask=m, keep_mask=False, subok=False)
+    y = masked_array(y, copy=False, mask=m, keep_mask=False, subok=False)
+    if ((x is masked) and not (y is masked)) or \
+            ((y is masked) and not (x is masked)):
+        msg = build_err_msg([x, y], err_msg=err_msg, verbose=verbose,
+                            header=header, names=('x', 'y'))
+        raise ValueError(msg)
+    # OK, now run the basic tests on filled versions
+    return np.testing.assert_array_compare(comparison,
+                                           x.filled(fill_value),
+                                           y.filled(fill_value),
+                                           err_msg=err_msg,
+                                           verbose=verbose, header=header)
+
+
+def assert_array_equal(x, y, err_msg='', verbose=True):
+    """
+    Checks the elementwise equality of two masked arrays.
+
+    """
+    assert_array_compare(operator.__eq__, x, y,
+                         err_msg=err_msg, verbose=verbose,
+                         header='Arrays are not equal')
+
+
+def fail_if_array_equal(x, y, err_msg='', verbose=True):
+    """
+    Raises an assertion error if two masked arrays are not equal elementwise.
+
+    """
+    def compare(x, y):
+        return (not np.all(approx(x, y)))
+    assert_array_compare(compare, x, y, err_msg=err_msg, verbose=verbose,
+                         header='Arrays are not equal')
+
+
+def assert_array_approx_equal(x, y, decimal=6, err_msg='', verbose=True):
+    """
+    Checks the equality of two masked arrays, up to given number odecimals.
+
+    The equality is checked elementwise.
+
+    """
+    def compare(x, y):
+        "Returns the result of the loose comparison between x and y)."
+        return approx(x, y, rtol=10. ** -decimal)
+    assert_array_compare(compare, x, y, err_msg=err_msg, verbose=verbose,
+                         header='Arrays are not almost equal')
+
+
+def assert_array_almost_equal(x, y, decimal=6, err_msg='', verbose=True):
+    """
+    Checks the equality of two masked arrays, up to given number odecimals.
+
+    The equality is checked elementwise.
+
+    """
+    def compare(x, y):
+        "Returns the result of the loose comparison between x and y)."
+        return almost(x, y, decimal)
+    assert_array_compare(compare, x, y, err_msg=err_msg, verbose=verbose,
+                         header='Arrays are not almost equal')
+
+
+def assert_array_less(x, y, err_msg='', verbose=True):
+    """
+    Checks that x is smaller than y elementwise.
+
+    """
+    assert_array_compare(operator.__lt__, x, y,
+                         err_msg=err_msg, verbose=verbose,
+                         header='Arrays are not less-ordered')
+
+
+def assert_mask_equal(m1, m2, err_msg=''):
+    """
+    Asserts the equality of two masks.
+
+    """
+    if m1 is nomask:
+        assert_(m2 is nomask)
+    if m2 is nomask:
+        assert_(m1 is nomask)
+    assert_array_equal(m1, m2, err_msg=err_msg)