two version of R2R are here HEAD master

1 files changed, 471 insertions, 0 deletions

diff --git a/.venv/lib/python3.12/site-packages/numpy/ma/core.pyi b/.venv/lib/python3.12/site-packages/numpy/ma/core.pyi
new file mode 100644
index 00000000..e94ebce3
--- /dev/null
+++ b/.venv/lib/python3.12/site-packages/numpy/ma/core.pyi
@@ -0,0 +1,471 @@
+from collections.abc import Callable
+from typing import Any, TypeVar
+from numpy import ndarray, dtype, float64
+
+from numpy import (
+    amax as amax,
+    amin as amin,
+    bool_ as bool_,
+    expand_dims as expand_dims,
+    clip as clip,
+    indices as indices,
+    ones_like as ones_like,
+    squeeze as squeeze,
+    zeros_like as zeros_like,
+)
+
+from numpy.lib.function_base import (
+    angle as angle,
+)
+
+# TODO: Set the `bound` to something more suitable once we
+# have proper shape support
+_ShapeType = TypeVar("_ShapeType", bound=Any)
+_DType_co = TypeVar("_DType_co", bound=dtype[Any], covariant=True)
+
+__all__: list[str]
+
+MaskType = bool_
+nomask: bool_
+
+class MaskedArrayFutureWarning(FutureWarning): ...
+class MAError(Exception): ...
+class MaskError(MAError): ...
+
+def default_fill_value(obj): ...
+def minimum_fill_value(obj): ...
+def maximum_fill_value(obj): ...
+def set_fill_value(a, fill_value): ...
+def common_fill_value(a, b): ...
+def filled(a, fill_value=...): ...
+def getdata(a, subok=...): ...
+get_data = getdata
+
+def fix_invalid(a, mask=..., copy=..., fill_value=...): ...
+
+class _MaskedUFunc:
+    f: Any
+    __doc__: Any
+    __name__: Any
+    def __init__(self, ufunc): ...
+
+class _MaskedUnaryOperation(_MaskedUFunc):
+    fill: Any
+    domain: Any
+    def __init__(self, mufunc, fill=..., domain=...): ...
+    def __call__(self, a, *args, **kwargs): ...
+
+class _MaskedBinaryOperation(_MaskedUFunc):
+    fillx: Any
+    filly: Any
+    def __init__(self, mbfunc, fillx=..., filly=...): ...
+    def __call__(self, a, b, *args, **kwargs): ...
+    def reduce(self, target, axis=..., dtype=...): ...
+    def outer(self, a, b): ...
+    def accumulate(self, target, axis=...): ...
+
+class _DomainedBinaryOperation(_MaskedUFunc):
+    domain: Any
+    fillx: Any
+    filly: Any
+    def __init__(self, dbfunc, domain, fillx=..., filly=...): ...
+    def __call__(self, a, b, *args, **kwargs): ...
+
+exp: _MaskedUnaryOperation
+conjugate: _MaskedUnaryOperation
+sin: _MaskedUnaryOperation
+cos: _MaskedUnaryOperation
+arctan: _MaskedUnaryOperation
+arcsinh: _MaskedUnaryOperation
+sinh: _MaskedUnaryOperation
+cosh: _MaskedUnaryOperation
+tanh: _MaskedUnaryOperation
+abs: _MaskedUnaryOperation
+absolute: _MaskedUnaryOperation
+fabs: _MaskedUnaryOperation
+negative: _MaskedUnaryOperation
+floor: _MaskedUnaryOperation
+ceil: _MaskedUnaryOperation
+around: _MaskedUnaryOperation
+logical_not: _MaskedUnaryOperation
+sqrt: _MaskedUnaryOperation
+log: _MaskedUnaryOperation
+log2: _MaskedUnaryOperation
+log10: _MaskedUnaryOperation
+tan: _MaskedUnaryOperation
+arcsin: _MaskedUnaryOperation
+arccos: _MaskedUnaryOperation
+arccosh: _MaskedUnaryOperation
+arctanh: _MaskedUnaryOperation
+
+add: _MaskedBinaryOperation
+subtract: _MaskedBinaryOperation
+multiply: _MaskedBinaryOperation
+arctan2: _MaskedBinaryOperation
+equal: _MaskedBinaryOperation
+not_equal: _MaskedBinaryOperation
+less_equal: _MaskedBinaryOperation
+greater_equal: _MaskedBinaryOperation
+less: _MaskedBinaryOperation
+greater: _MaskedBinaryOperation
+logical_and: _MaskedBinaryOperation
+alltrue: _MaskedBinaryOperation
+logical_or: _MaskedBinaryOperation
+sometrue: Callable[..., Any]
+logical_xor: _MaskedBinaryOperation
+bitwise_and: _MaskedBinaryOperation
+bitwise_or: _MaskedBinaryOperation
+bitwise_xor: _MaskedBinaryOperation
+hypot: _MaskedBinaryOperation
+divide: _MaskedBinaryOperation
+true_divide: _MaskedBinaryOperation
+floor_divide: _MaskedBinaryOperation
+remainder: _MaskedBinaryOperation
+fmod: _MaskedBinaryOperation
+mod: _MaskedBinaryOperation
+
+def make_mask_descr(ndtype): ...
+def getmask(a): ...
+get_mask = getmask
+
+def getmaskarray(arr): ...
+def is_mask(m): ...
+def make_mask(m, copy=..., shrink=..., dtype=...): ...
+def make_mask_none(newshape, dtype=...): ...
+def mask_or(m1, m2, copy=..., shrink=...): ...
+def flatten_mask(mask): ...
+def masked_where(condition, a, copy=...): ...
+def masked_greater(x, value, copy=...): ...
+def masked_greater_equal(x, value, copy=...): ...
+def masked_less(x, value, copy=...): ...
+def masked_less_equal(x, value, copy=...): ...
+def masked_not_equal(x, value, copy=...): ...
+def masked_equal(x, value, copy=...): ...
+def masked_inside(x, v1, v2, copy=...): ...
+def masked_outside(x, v1, v2, copy=...): ...
+def masked_object(x, value, copy=..., shrink=...): ...
+def masked_values(x, value, rtol=..., atol=..., copy=..., shrink=...): ...
+def masked_invalid(a, copy=...): ...
+
+class _MaskedPrintOption:
+    def __init__(self, display): ...
+    def display(self): ...
+    def set_display(self, s): ...
+    def enabled(self): ...
+    def enable(self, shrink=...): ...
+
+masked_print_option: _MaskedPrintOption
+
+def flatten_structured_array(a): ...
+
+class MaskedIterator:
+    ma: Any
+    dataiter: Any
+    maskiter: Any
+    def __init__(self, ma): ...
+    def __iter__(self): ...
+    def __getitem__(self, indx): ...
+    def __setitem__(self, index, value): ...
+    def __next__(self): ...
+
+class MaskedArray(ndarray[_ShapeType, _DType_co]):
+    __array_priority__: Any
+    def __new__(cls, data=..., mask=..., dtype=..., copy=..., subok=..., ndmin=..., fill_value=..., keep_mask=..., hard_mask=..., shrink=..., order=...): ...
+    def __array_finalize__(self, obj): ...
+    def __array_wrap__(self, obj, context=...): ...
+    def view(self, dtype=..., type=..., fill_value=...): ...
+    def __getitem__(self, indx): ...
+    def __setitem__(self, indx, value): ...
+    @property
+    def dtype(self): ...
+    @dtype.setter
+    def dtype(self, dtype): ...
+    @property
+    def shape(self): ...
+    @shape.setter
+    def shape(self, shape): ...
+    def __setmask__(self, mask, copy=...): ...
+    @property
+    def mask(self): ...
+    @mask.setter
+    def mask(self, value): ...
+    @property
+    def recordmask(self): ...
+    @recordmask.setter
+    def recordmask(self, mask): ...
+    def harden_mask(self): ...
+    def soften_mask(self): ...
+    @property
+    def hardmask(self): ...
+    def unshare_mask(self): ...
+    @property
+    def sharedmask(self): ...
+    def shrink_mask(self): ...
+    @property
+    def baseclass(self): ...
+    data: Any
+    @property
+    def flat(self): ...
+    @flat.setter
+    def flat(self, value): ...
+    @property
+    def fill_value(self): ...
+    @fill_value.setter
+    def fill_value(self, value=...): ...
+    get_fill_value: Any
+    set_fill_value: Any
+    def filled(self, fill_value=...): ...
+    def compressed(self): ...
+    def compress(self, condition, axis=..., out=...): ...
+    def __eq__(self, other): ...
+    def __ne__(self, other): ...
+    def __ge__(self, other): ...
+    def __gt__(self, other): ...
+    def __le__(self, other): ...
+    def __lt__(self, other): ...
+    def __add__(self, other): ...
+    def __radd__(self, other): ...
+    def __sub__(self, other): ...
+    def __rsub__(self, other): ...
+    def __mul__(self, other): ...
+    def __rmul__(self, other): ...
+    def __div__(self, other): ...
+    def __truediv__(self, other): ...
+    def __rtruediv__(self, other): ...
+    def __floordiv__(self, other): ...
+    def __rfloordiv__(self, other): ...
+    def __pow__(self, other): ...
+    def __rpow__(self, other): ...
+    def __iadd__(self, other): ...
+    def __isub__(self, other): ...
+    def __imul__(self, other): ...
+    def __idiv__(self, other): ...
+    def __ifloordiv__(self, other): ...
+    def __itruediv__(self, other): ...
+    def __ipow__(self, other): ...
+    def __float__(self): ...
+    def __int__(self): ...
+    @property  # type: ignore[misc]
+    def imag(self): ...
+    get_imag: Any
+    @property  # type: ignore[misc]
+    def real(self): ...
+    get_real: Any
+    def count(self, axis=..., keepdims=...): ...
+    def ravel(self, order=...): ...
+    def reshape(self, *s, **kwargs): ...
+    def resize(self, newshape, refcheck=..., order=...): ...
+    def put(self, indices, values, mode=...): ...
+    def ids(self): ...
+    def iscontiguous(self): ...
+    def all(self, axis=..., out=..., keepdims=...): ...
+    def any(self, axis=..., out=..., keepdims=...): ...
+    def nonzero(self): ...
+    def trace(self, offset=..., axis1=..., axis2=..., dtype=..., out=...): ...
+    def dot(self, b, out=..., strict=...): ...
+    def sum(self, axis=..., dtype=..., out=..., keepdims=...): ...
+    def cumsum(self, axis=..., dtype=..., out=...): ...
+    def prod(self, axis=..., dtype=..., out=..., keepdims=...): ...
+    product: Any
+    def cumprod(self, axis=..., dtype=..., out=...): ...
+    def mean(self, axis=..., dtype=..., out=..., keepdims=...): ...
+    def anom(self, axis=..., dtype=...): ...
+    def var(self, axis=..., dtype=..., out=..., ddof=..., keepdims=...): ...
+    def std(self, axis=..., dtype=..., out=..., ddof=..., keepdims=...): ...
+    def round(self, decimals=..., out=...): ...
+    def argsort(self, axis=..., kind=..., order=..., endwith=..., fill_value=...): ...
+    def argmin(self, axis=..., fill_value=..., out=..., *, keepdims=...): ...
+    def argmax(self, axis=..., fill_value=..., out=..., *, keepdims=...): ...
+    def sort(self, axis=..., kind=..., order=..., endwith=..., fill_value=...): ...
+    def min(self, axis=..., out=..., fill_value=..., keepdims=...): ...
+    # NOTE: deprecated
+    # def tostring(self, fill_value=..., order=...): ...
+    def max(self, axis=..., out=..., fill_value=..., keepdims=...): ...
+    def ptp(self, axis=..., out=..., fill_value=..., keepdims=...): ...
+    def partition(self, *args, **kwargs): ...
+    def argpartition(self, *args, **kwargs): ...
+    def take(self, indices, axis=..., out=..., mode=...): ...
+    copy: Any
+    diagonal: Any
+    flatten: Any
+    repeat: Any
+    squeeze: Any
+    swapaxes: Any
+    T: Any
+    transpose: Any
+    def tolist(self, fill_value=...): ...
+    def tobytes(self, fill_value=..., order=...): ...
+    def tofile(self, fid, sep=..., format=...): ...
+    def toflex(self): ...
+    torecords: Any
+    def __reduce__(self): ...
+    def __deepcopy__(self, memo=...): ...
+
+class mvoid(MaskedArray[_ShapeType, _DType_co]):
+    def __new__(
+        self,
+        data,
+        mask=...,
+        dtype=...,
+        fill_value=...,
+        hardmask=...,
+        copy=...,
+        subok=...,
+    ): ...
+    def __getitem__(self, indx): ...
+    def __setitem__(self, indx, value): ...
+    def __iter__(self): ...
+    def __len__(self): ...
+    def filled(self, fill_value=...): ...
+    def tolist(self): ...
+
+def isMaskedArray(x): ...
+isarray = isMaskedArray
+isMA = isMaskedArray
+
+# 0D float64 array
+class MaskedConstant(MaskedArray[Any, dtype[float64]]):
+    def __new__(cls): ...
+    __class__: Any
+    def __array_finalize__(self, obj): ...
+    def __array_prepare__(self, obj, context=...): ...
+    def __array_wrap__(self, obj, context=...): ...
+    def __format__(self, format_spec): ...
+    def __reduce__(self): ...
+    def __iop__(self, other): ...
+    __iadd__: Any
+    __isub__: Any
+    __imul__: Any
+    __ifloordiv__: Any
+    __itruediv__: Any
+    __ipow__: Any
+    def copy(self, *args, **kwargs): ...
+    def __copy__(self): ...
+    def __deepcopy__(self, memo): ...
+    def __setattr__(self, attr, value): ...
+
+masked: MaskedConstant
+masked_singleton: MaskedConstant
+masked_array = MaskedArray
+
+def array(
+    data,
+    dtype=...,
+    copy=...,
+    order=...,
+    mask=...,
+    fill_value=...,
+    keep_mask=...,
+    hard_mask=...,
+    shrink=...,
+    subok=...,
+    ndmin=...,
+): ...
+def is_masked(x): ...
+
+class _extrema_operation(_MaskedUFunc):
+    compare: Any
+    fill_value_func: Any
+    def __init__(self, ufunc, compare, fill_value): ...
+    # NOTE: in practice `b` has a default value, but users should
+    # explicitly provide a value here as the default is deprecated
+    def __call__(self, a, b): ...
+    def reduce(self, target, axis=...): ...
+    def outer(self, a, b): ...
+
+def min(obj, axis=..., out=..., fill_value=..., keepdims=...): ...
+def max(obj, axis=..., out=..., fill_value=..., keepdims=...): ...
+def ptp(obj, axis=..., out=..., fill_value=..., keepdims=...): ...
+
+class _frommethod:
+    __name__: Any
+    __doc__: Any
+    reversed: Any
+    def __init__(self, methodname, reversed=...): ...
+    def getdoc(self): ...
+    def __call__(self, a, *args, **params): ...
+
+all: _frommethod
+anomalies: _frommethod
+anom: _frommethod
+any: _frommethod
+compress: _frommethod
+cumprod: _frommethod
+cumsum: _frommethod
+copy: _frommethod
+diagonal: _frommethod
+harden_mask: _frommethod
+ids: _frommethod
+mean: _frommethod
+nonzero: _frommethod
+prod: _frommethod
+product: _frommethod
+ravel: _frommethod
+repeat: _frommethod
+soften_mask: _frommethod
+std: _frommethod
+sum: _frommethod
+swapaxes: _frommethod
+trace: _frommethod
+var: _frommethod
+count: _frommethod
+argmin: _frommethod
+argmax: _frommethod
+
+minimum: _extrema_operation
+maximum: _extrema_operation
+
+def take(a, indices, axis=..., out=..., mode=...): ...
+def power(a, b, third=...): ...
+def argsort(a, axis=..., kind=..., order=..., endwith=..., fill_value=...): ...
+def sort(a, axis=..., kind=..., order=..., endwith=..., fill_value=...): ...
+def compressed(x): ...
+def concatenate(arrays, axis=...): ...
+def diag(v, k=...): ...
+def left_shift(a, n): ...
+def right_shift(a, n): ...
+def put(a, indices, values, mode=...): ...
+def putmask(a, mask, values): ...
+def transpose(a, axes=...): ...
+def reshape(a, new_shape, order=...): ...
+def resize(x, new_shape): ...
+def ndim(obj): ...
+def shape(obj): ...
+def size(obj, axis=...): ...
+def diff(a, /, n=..., axis=..., prepend=..., append=...): ...
+def where(condition, x=..., y=...): ...
+def choose(indices, choices, out=..., mode=...): ...
+def round(a, decimals=..., out=...): ...
+
+def inner(a, b): ...
+innerproduct = inner
+
+def outer(a, b): ...
+outerproduct = outer
+
+def correlate(a, v, mode=..., propagate_mask=...): ...
+def convolve(a, v, mode=..., propagate_mask=...): ...
+def allequal(a, b, fill_value=...): ...
+def allclose(a, b, masked_equal=..., rtol=..., atol=...): ...
+def asarray(a, dtype=..., order=...): ...
+def asanyarray(a, dtype=...): ...
+def fromflex(fxarray): ...
+
+class _convert2ma:
+    __doc__: Any
+    def __init__(self, funcname, params=...): ...
+    def getdoc(self): ...
+    def __call__(self, *args, **params): ...
+
+arange: _convert2ma
+empty: _convert2ma
+empty_like: _convert2ma
+frombuffer: _convert2ma
+fromfunction: _convert2ma
+identity: _convert2ma
+ones: _convert2ma
+zeros: _convert2ma
+
+def append(a, b, axis=...): ...
+def dot(a, b, strict=..., out=...): ...
+def mask_rowcols(a, axis=...): ...