two version of R2R are here HEAD master

1 files changed, 362 insertions, 0 deletions

diff --git a/.venv/lib/python3.12/site-packages/networkx/classes/tests/test_subgraphviews.py b/.venv/lib/python3.12/site-packages/networkx/classes/tests/test_subgraphviews.py
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+++ b/.venv/lib/python3.12/site-packages/networkx/classes/tests/test_subgraphviews.py
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+import pytest
+
+import networkx as nx
+from networkx.utils import edges_equal
+
+
+class TestSubGraphView:
+    gview = staticmethod(nx.subgraph_view)
+    graph = nx.Graph
+    hide_edges_filter = staticmethod(nx.filters.hide_edges)
+    show_edges_filter = staticmethod(nx.filters.show_edges)
+
+    @classmethod
+    def setup_class(cls):
+        cls.G = nx.path_graph(9, create_using=cls.graph())
+        cls.hide_edges_w_hide_nodes = {(3, 4), (4, 5), (5, 6)}
+
+    def test_hidden_nodes(self):
+        hide_nodes = [4, 5, 111]
+        nodes_gone = nx.filters.hide_nodes(hide_nodes)
+        gview = self.gview
+        G = gview(self.G, filter_node=nodes_gone)
+        assert self.G.nodes - G.nodes == {4, 5}
+        assert self.G.edges - G.edges == self.hide_edges_w_hide_nodes
+        if G.is_directed():
+            assert list(G[3]) == []
+            assert list(G[2]) == [3]
+        else:
+            assert list(G[3]) == [2]
+            assert set(G[2]) == {1, 3}
+        pytest.raises(KeyError, G.__getitem__, 4)
+        pytest.raises(KeyError, G.__getitem__, 112)
+        pytest.raises(KeyError, G.__getitem__, 111)
+        assert G.degree(3) == (3 if G.is_multigraph() else 1)
+        assert G.size() == (7 if G.is_multigraph() else 5)
+
+    def test_hidden_edges(self):
+        hide_edges = [(2, 3), (8, 7), (222, 223)]
+        edges_gone = self.hide_edges_filter(hide_edges)
+        gview = self.gview
+        G = gview(self.G, filter_edge=edges_gone)
+        assert self.G.nodes == G.nodes
+        if G.is_directed():
+            assert self.G.edges - G.edges == {(2, 3)}
+            assert list(G[2]) == []
+            assert list(G.pred[3]) == []
+            assert list(G.pred[2]) == [1]
+            assert G.size() == 7
+        else:
+            assert self.G.edges - G.edges == {(2, 3), (7, 8)}
+            assert list(G[2]) == [1]
+            assert G.size() == 6
+        assert list(G[3]) == [4]
+        pytest.raises(KeyError, G.__getitem__, 221)
+        pytest.raises(KeyError, G.__getitem__, 222)
+        assert G.degree(3) == 1
+
+    def test_shown_node(self):
+        induced_subgraph = nx.filters.show_nodes([2, 3, 111])
+        gview = self.gview
+        G = gview(self.G, filter_node=induced_subgraph)
+        assert set(G.nodes) == {2, 3}
+        if G.is_directed():
+            assert list(G[3]) == []
+        else:
+            assert list(G[3]) == [2]
+        assert list(G[2]) == [3]
+        pytest.raises(KeyError, G.__getitem__, 4)
+        pytest.raises(KeyError, G.__getitem__, 112)
+        pytest.raises(KeyError, G.__getitem__, 111)
+        assert G.degree(3) == (3 if G.is_multigraph() else 1)
+        assert G.size() == (3 if G.is_multigraph() else 1)
+
+    def test_shown_edges(self):
+        show_edges = [(2, 3), (8, 7), (222, 223)]
+        edge_subgraph = self.show_edges_filter(show_edges)
+        G = self.gview(self.G, filter_edge=edge_subgraph)
+        assert self.G.nodes == G.nodes
+        if G.is_directed():
+            assert G.edges == {(2, 3)}
+            assert list(G[3]) == []
+            assert list(G[2]) == [3]
+            assert list(G.pred[3]) == [2]
+            assert list(G.pred[2]) == []
+            assert G.size() == 1
+        else:
+            assert G.edges == {(2, 3), (7, 8)}
+            assert list(G[3]) == [2]
+            assert list(G[2]) == [3]
+            assert G.size() == 2
+        pytest.raises(KeyError, G.__getitem__, 221)
+        pytest.raises(KeyError, G.__getitem__, 222)
+        assert G.degree(3) == 1
+
+
+class TestSubDiGraphView(TestSubGraphView):
+    gview = staticmethod(nx.subgraph_view)
+    graph = nx.DiGraph
+    hide_edges_filter = staticmethod(nx.filters.hide_diedges)
+    show_edges_filter = staticmethod(nx.filters.show_diedges)
+    hide_edges = [(2, 3), (8, 7), (222, 223)]
+    excluded = {(2, 3), (3, 4), (4, 5), (5, 6)}
+
+    def test_inoutedges(self):
+        edges_gone = self.hide_edges_filter(self.hide_edges)
+        hide_nodes = [4, 5, 111]
+        nodes_gone = nx.filters.hide_nodes(hide_nodes)
+        G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
+
+        assert self.G.in_edges - G.in_edges == self.excluded
+        assert self.G.out_edges - G.out_edges == self.excluded
+
+    def test_pred(self):
+        edges_gone = self.hide_edges_filter(self.hide_edges)
+        hide_nodes = [4, 5, 111]
+        nodes_gone = nx.filters.hide_nodes(hide_nodes)
+        G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
+
+        assert list(G.pred[2]) == [1]
+        assert list(G.pred[6]) == []
+
+    def test_inout_degree(self):
+        edges_gone = self.hide_edges_filter(self.hide_edges)
+        hide_nodes = [4, 5, 111]
+        nodes_gone = nx.filters.hide_nodes(hide_nodes)
+        G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
+
+        assert G.degree(2) == 1
+        assert G.out_degree(2) == 0
+        assert G.in_degree(2) == 1
+        assert G.size() == 4
+
+
+# multigraph
+class TestMultiGraphView(TestSubGraphView):
+    gview = staticmethod(nx.subgraph_view)
+    graph = nx.MultiGraph
+    hide_edges_filter = staticmethod(nx.filters.hide_multiedges)
+    show_edges_filter = staticmethod(nx.filters.show_multiedges)
+
+    @classmethod
+    def setup_class(cls):
+        cls.G = nx.path_graph(9, create_using=cls.graph())
+        multiedges = {(2, 3, 4), (2, 3, 5)}
+        cls.G.add_edges_from(multiedges)
+        cls.hide_edges_w_hide_nodes = {(3, 4, 0), (4, 5, 0), (5, 6, 0)}
+
+    def test_hidden_edges(self):
+        hide_edges = [(2, 3, 4), (2, 3, 3), (8, 7, 0), (222, 223, 0)]
+        edges_gone = self.hide_edges_filter(hide_edges)
+        G = self.gview(self.G, filter_edge=edges_gone)
+        assert self.G.nodes == G.nodes
+        if G.is_directed():
+            assert self.G.edges - G.edges == {(2, 3, 4)}
+            assert list(G[3]) == [4]
+            assert list(G[2]) == [3]
+            assert list(G.pred[3]) == [2]  # only one 2 but two edges
+            assert list(G.pred[2]) == [1]
+            assert G.size() == 9
+        else:
+            assert self.G.edges - G.edges == {(2, 3, 4), (7, 8, 0)}
+            assert list(G[3]) == [2, 4]
+            assert list(G[2]) == [1, 3]
+            assert G.size() == 8
+        assert G.degree(3) == 3
+        pytest.raises(KeyError, G.__getitem__, 221)
+        pytest.raises(KeyError, G.__getitem__, 222)
+
+    def test_shown_edges(self):
+        show_edges = [(2, 3, 4), (2, 3, 3), (8, 7, 0), (222, 223, 0)]
+        edge_subgraph = self.show_edges_filter(show_edges)
+        G = self.gview(self.G, filter_edge=edge_subgraph)
+        assert self.G.nodes == G.nodes
+        if G.is_directed():
+            assert G.edges == {(2, 3, 4)}
+            assert list(G[3]) == []
+            assert list(G.pred[3]) == [2]
+            assert list(G.pred[2]) == []
+            assert G.size() == 1
+        else:
+            assert G.edges == {(2, 3, 4), (7, 8, 0)}
+            assert G.size() == 2
+            assert list(G[3]) == [2]
+        assert G.degree(3) == 1
+        assert list(G[2]) == [3]
+        pytest.raises(KeyError, G.__getitem__, 221)
+        pytest.raises(KeyError, G.__getitem__, 222)
+
+
+# multidigraph
+class TestMultiDiGraphView(TestMultiGraphView, TestSubDiGraphView):
+    gview = staticmethod(nx.subgraph_view)
+    graph = nx.MultiDiGraph
+    hide_edges_filter = staticmethod(nx.filters.hide_multidiedges)
+    show_edges_filter = staticmethod(nx.filters.show_multidiedges)
+    hide_edges = [(2, 3, 0), (8, 7, 0), (222, 223, 0)]
+    excluded = {(2, 3, 0), (3, 4, 0), (4, 5, 0), (5, 6, 0)}
+
+    def test_inout_degree(self):
+        edges_gone = self.hide_edges_filter(self.hide_edges)
+        hide_nodes = [4, 5, 111]
+        nodes_gone = nx.filters.hide_nodes(hide_nodes)
+        G = self.gview(self.G, filter_node=nodes_gone, filter_edge=edges_gone)
+
+        assert G.degree(2) == 3
+        assert G.out_degree(2) == 2
+        assert G.in_degree(2) == 1
+        assert G.size() == 6
+
+
+# induced_subgraph
+class TestInducedSubGraph:
+    @classmethod
+    def setup_class(cls):
+        cls.K3 = G = nx.complete_graph(3)
+        G.graph["foo"] = []
+        G.nodes[0]["foo"] = []
+        G.remove_edge(1, 2)
+        ll = []
+        G.add_edge(1, 2, foo=ll)
+        G.add_edge(2, 1, foo=ll)
+
+    def test_full_graph(self):
+        G = self.K3
+        H = nx.induced_subgraph(G, [0, 1, 2, 5])
+        assert H.name == G.name
+        self.graphs_equal(H, G)
+        self.same_attrdict(H, G)
+
+    def test_partial_subgraph(self):
+        G = self.K3
+        H = nx.induced_subgraph(G, 0)
+        assert dict(H.adj) == {0: {}}
+        assert dict(G.adj) != {0: {}}
+
+        H = nx.induced_subgraph(G, [0, 1])
+        assert dict(H.adj) == {0: {1: {}}, 1: {0: {}}}
+
+    def same_attrdict(self, H, G):
+        old_foo = H[1][2]["foo"]
+        H.edges[1, 2]["foo"] = "baz"
+        assert G.edges == H.edges
+        H.edges[1, 2]["foo"] = old_foo
+        assert G.edges == H.edges
+        old_foo = H.nodes[0]["foo"]
+        H.nodes[0]["foo"] = "baz"
+        assert G.nodes == H.nodes
+        H.nodes[0]["foo"] = old_foo
+        assert G.nodes == H.nodes
+
+    def graphs_equal(self, H, G):
+        assert G._adj == H._adj
+        assert G._node == H._node
+        assert G.graph == H.graph
+        assert G.name == H.name
+        if not G.is_directed() and not H.is_directed():
+            assert H._adj[1][2] is H._adj[2][1]
+            assert G._adj[1][2] is G._adj[2][1]
+        else:  # at least one is directed
+            if not G.is_directed():
+                G._pred = G._adj
+                G._succ = G._adj
+            if not H.is_directed():
+                H._pred = H._adj
+                H._succ = H._adj
+            assert G._pred == H._pred
+            assert G._succ == H._succ
+            assert H._succ[1][2] is H._pred[2][1]
+            assert G._succ[1][2] is G._pred[2][1]
+
+
+# edge_subgraph
+class TestEdgeSubGraph:
+    @classmethod
+    def setup_class(cls):
+        # Create a path graph on five nodes.
+        cls.G = G = nx.path_graph(5)
+        # Add some node, edge, and graph attributes.
+        for i in range(5):
+            G.nodes[i]["name"] = f"node{i}"
+        G.edges[0, 1]["name"] = "edge01"
+        G.edges[3, 4]["name"] = "edge34"
+        G.graph["name"] = "graph"
+        # Get the subgraph induced by the first and last edges.
+        cls.H = nx.edge_subgraph(G, [(0, 1), (3, 4)])
+
+    def test_correct_nodes(self):
+        """Tests that the subgraph has the correct nodes."""
+        assert [(0, "node0"), (1, "node1"), (3, "node3"), (4, "node4")] == sorted(
+            self.H.nodes.data("name")
+        )
+
+    def test_correct_edges(self):
+        """Tests that the subgraph has the correct edges."""
+        assert edges_equal(
+            [(0, 1, "edge01"), (3, 4, "edge34")], self.H.edges.data("name")
+        )
+
+    def test_add_node(self):
+        """Tests that adding a node to the original graph does not
+        affect the nodes of the subgraph.
+
+        """
+        self.G.add_node(5)
+        assert [0, 1, 3, 4] == sorted(self.H.nodes)
+        self.G.remove_node(5)
+
+    def test_remove_node(self):
+        """Tests that removing a node in the original graph
+        removes the nodes of the subgraph.
+
+        """
+        self.G.remove_node(0)
+        assert [1, 3, 4] == sorted(self.H.nodes)
+        self.G.add_node(0, name="node0")
+        self.G.add_edge(0, 1, name="edge01")
+
+    def test_node_attr_dict(self):
+        """Tests that the node attribute dictionary of the two graphs is
+        the same object.
+
+        """
+        for v in self.H:
+            assert self.G.nodes[v] == self.H.nodes[v]
+        # Making a change to G should make a change in H and vice versa.
+        self.G.nodes[0]["name"] = "foo"
+        assert self.G.nodes[0] == self.H.nodes[0]
+        self.H.nodes[1]["name"] = "bar"
+        assert self.G.nodes[1] == self.H.nodes[1]
+        # Revert the change, so tests pass with pytest-randomly
+        self.G.nodes[0]["name"] = "node0"
+        self.H.nodes[1]["name"] = "node1"
+
+    def test_edge_attr_dict(self):
+        """Tests that the edge attribute dictionary of the two graphs is
+        the same object.
+
+        """
+        for u, v in self.H.edges():
+            assert self.G.edges[u, v] == self.H.edges[u, v]
+        # Making a change to G should make a change in H and vice versa.
+        self.G.edges[0, 1]["name"] = "foo"
+        assert self.G.edges[0, 1]["name"] == self.H.edges[0, 1]["name"]
+        self.H.edges[3, 4]["name"] = "bar"
+        assert self.G.edges[3, 4]["name"] == self.H.edges[3, 4]["name"]
+        # Revert the change, so tests pass with pytest-randomly
+        self.G.edges[0, 1]["name"] = "edge01"
+        self.H.edges[3, 4]["name"] = "edge34"
+
+    def test_graph_attr_dict(self):
+        """Tests that the graph attribute dictionary of the two graphs
+        is the same object.
+
+        """
+        assert self.G.graph is self.H.graph
+
+    def test_readonly(self):
+        """Tests that the subgraph cannot change the graph structure"""
+        pytest.raises(nx.NetworkXError, self.H.add_node, 5)
+        pytest.raises(nx.NetworkXError, self.H.remove_node, 0)
+        pytest.raises(nx.NetworkXError, self.H.add_edge, 5, 6)
+        pytest.raises(nx.NetworkXError, self.H.remove_edge, 0, 1)