two version of R2R are here HEAD master

1 files changed, 395 insertions, 0 deletions

diff --git a/.venv/lib/python3.12/site-packages/fsspec/implementations/ftp.py b/.venv/lib/python3.12/site-packages/fsspec/implementations/ftp.py
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+++ b/.venv/lib/python3.12/site-packages/fsspec/implementations/ftp.py
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+import os
+import sys
+import uuid
+import warnings
+from ftplib import FTP, FTP_TLS, Error, error_perm
+from typing import Any
+
+from ..spec import AbstractBufferedFile, AbstractFileSystem
+from ..utils import infer_storage_options, isfilelike
+
+
+class FTPFileSystem(AbstractFileSystem):
+    """A filesystem over classic FTP"""
+
+    root_marker = "/"
+    cachable = False
+    protocol = "ftp"
+
+    def __init__(
+        self,
+        host,
+        port=21,
+        username=None,
+        password=None,
+        acct=None,
+        block_size=None,
+        tempdir=None,
+        timeout=30,
+        encoding="utf-8",
+        tls=False,
+        **kwargs,
+    ):
+        """
+        You can use _get_kwargs_from_urls to get some kwargs from
+        a reasonable FTP url.
+
+        Authentication will be anonymous if username/password are not
+        given.
+
+        Parameters
+        ----------
+        host: str
+            The remote server name/ip to connect to
+        port: int
+            Port to connect with
+        username: str or None
+            If authenticating, the user's identifier
+        password: str of None
+            User's password on the server, if using
+        acct: str or None
+            Some servers also need an "account" string for auth
+        block_size: int or None
+            If given, the read-ahead or write buffer size.
+        tempdir: str
+            Directory on remote to put temporary files when in a transaction
+        timeout: int
+            Timeout of the ftp connection in seconds
+        encoding: str
+            Encoding to use for directories and filenames in FTP connection
+        tls: bool
+            Use FTP-TLS, by default False
+        """
+        super().__init__(**kwargs)
+        self.host = host
+        self.port = port
+        self.tempdir = tempdir or "/tmp"
+        self.cred = username or "", password or "", acct or ""
+        self.timeout = timeout
+        self.encoding = encoding
+        if block_size is not None:
+            self.blocksize = block_size
+        else:
+            self.blocksize = 2**16
+        self.tls = tls
+        self._connect()
+        if self.tls:
+            self.ftp.prot_p()
+
+    def _connect(self):
+        if self.tls:
+            ftp_cls = FTP_TLS
+        else:
+            ftp_cls = FTP
+        if sys.version_info >= (3, 9):
+            self.ftp = ftp_cls(timeout=self.timeout, encoding=self.encoding)
+        elif self.encoding:
+            warnings.warn("`encoding` not supported for python<3.9, ignoring")
+            self.ftp = ftp_cls(timeout=self.timeout)
+        else:
+            self.ftp = ftp_cls(timeout=self.timeout)
+        self.ftp.connect(self.host, self.port)
+        self.ftp.login(*self.cred)
+
+    @classmethod
+    def _strip_protocol(cls, path):
+        return "/" + infer_storage_options(path)["path"].lstrip("/").rstrip("/")
+
+    @staticmethod
+    def _get_kwargs_from_urls(urlpath):
+        out = infer_storage_options(urlpath)
+        out.pop("path", None)
+        out.pop("protocol", None)
+        return out
+
+    def ls(self, path, detail=True, **kwargs):
+        path = self._strip_protocol(path)
+        out = []
+        if path not in self.dircache:
+            try:
+                try:
+                    out = [
+                        (fn, details)
+                        for (fn, details) in self.ftp.mlsd(path)
+                        if fn not in [".", ".."]
+                        and details["type"] not in ["pdir", "cdir"]
+                    ]
+                except error_perm:
+                    out = _mlsd2(self.ftp, path)  # Not platform independent
+                for fn, details in out:
+                    details["name"] = "/".join(
+                        ["" if path == "/" else path, fn.lstrip("/")]
+                    )
+                    if details["type"] == "file":
+                        details["size"] = int(details["size"])
+                    else:
+                        details["size"] = 0
+                    if details["type"] == "dir":
+                        details["type"] = "directory"
+                self.dircache[path] = out
+            except Error:
+                try:
+                    info = self.info(path)
+                    if info["type"] == "file":
+                        out = [(path, info)]
+                except (Error, IndexError) as exc:
+                    raise FileNotFoundError(path) from exc
+        files = self.dircache.get(path, out)
+        if not detail:
+            return sorted([fn for fn, details in files])
+        return [details for fn, details in files]
+
+    def info(self, path, **kwargs):
+        # implement with direct method
+        path = self._strip_protocol(path)
+        if path == "/":
+            # special case, since this dir has no real entry
+            return {"name": "/", "size": 0, "type": "directory"}
+        files = self.ls(self._parent(path).lstrip("/"), True)
+        try:
+            out = next(f for f in files if f["name"] == path)
+        except StopIteration as exc:
+            raise FileNotFoundError(path) from exc
+        return out
+
+    def get_file(self, rpath, lpath, **kwargs):
+        if self.isdir(rpath):
+            if not os.path.exists(lpath):
+                os.mkdir(lpath)
+            return
+        if isfilelike(lpath):
+            outfile = lpath
+        else:
+            outfile = open(lpath, "wb")
+
+        def cb(x):
+            outfile.write(x)
+
+        self.ftp.retrbinary(
+            f"RETR {rpath}",
+            blocksize=self.blocksize,
+            callback=cb,
+        )
+        if not isfilelike(lpath):
+            outfile.close()
+
+    def cat_file(self, path, start=None, end=None, **kwargs):
+        if end is not None:
+            return super().cat_file(path, start, end, **kwargs)
+        out = []
+
+        def cb(x):
+            out.append(x)
+
+        try:
+            self.ftp.retrbinary(
+                f"RETR {path}",
+                blocksize=self.blocksize,
+                rest=start,
+                callback=cb,
+            )
+        except (Error, error_perm) as orig_exc:
+            raise FileNotFoundError(path) from orig_exc
+        return b"".join(out)
+
+    def _open(
+        self,
+        path,
+        mode="rb",
+        block_size=None,
+        cache_options=None,
+        autocommit=True,
+        **kwargs,
+    ):
+        path = self._strip_protocol(path)
+        block_size = block_size or self.blocksize
+        return FTPFile(
+            self,
+            path,
+            mode=mode,
+            block_size=block_size,
+            tempdir=self.tempdir,
+            autocommit=autocommit,
+            cache_options=cache_options,
+        )
+
+    def _rm(self, path):
+        path = self._strip_protocol(path)
+        self.ftp.delete(path)
+        self.invalidate_cache(self._parent(path))
+
+    def rm(self, path, recursive=False, maxdepth=None):
+        paths = self.expand_path(path, recursive=recursive, maxdepth=maxdepth)
+        for p in reversed(paths):
+            if self.isfile(p):
+                self.rm_file(p)
+            else:
+                self.rmdir(p)
+
+    def mkdir(self, path: str, create_parents: bool = True, **kwargs: Any) -> None:
+        path = self._strip_protocol(path)
+        parent = self._parent(path)
+        if parent != self.root_marker and not self.exists(parent) and create_parents:
+            self.mkdir(parent, create_parents=create_parents)
+
+        self.ftp.mkd(path)
+        self.invalidate_cache(self._parent(path))
+
+    def makedirs(self, path: str, exist_ok: bool = False) -> None:
+        path = self._strip_protocol(path)
+        if self.exists(path):
+            # NB: "/" does not "exist" as it has no directory entry
+            if not exist_ok:
+                raise FileExistsError(f"{path} exists without `exist_ok`")
+            # exists_ok=True -> no-op
+        else:
+            self.mkdir(path, create_parents=True)
+
+    def rmdir(self, path):
+        path = self._strip_protocol(path)
+        self.ftp.rmd(path)
+        self.invalidate_cache(self._parent(path))
+
+    def mv(self, path1, path2, **kwargs):
+        path1 = self._strip_protocol(path1)
+        path2 = self._strip_protocol(path2)
+        self.ftp.rename(path1, path2)
+        self.invalidate_cache(self._parent(path1))
+        self.invalidate_cache(self._parent(path2))
+
+    def __del__(self):
+        self.ftp.close()
+
+    def invalidate_cache(self, path=None):
+        if path is None:
+            self.dircache.clear()
+        else:
+            self.dircache.pop(path, None)
+        super().invalidate_cache(path)
+
+
+class TransferDone(Exception):
+    """Internal exception to break out of transfer"""
+
+    pass
+
+
+class FTPFile(AbstractBufferedFile):
+    """Interact with a remote FTP file with read/write buffering"""
+
+    def __init__(
+        self,
+        fs,
+        path,
+        mode="rb",
+        block_size="default",
+        autocommit=True,
+        cache_type="readahead",
+        cache_options=None,
+        **kwargs,
+    ):
+        super().__init__(
+            fs,
+            path,
+            mode=mode,
+            block_size=block_size,
+            autocommit=autocommit,
+            cache_type=cache_type,
+            cache_options=cache_options,
+            **kwargs,
+        )
+        if not autocommit:
+            self.target = self.path
+            self.path = "/".join([kwargs["tempdir"], str(uuid.uuid4())])
+
+    def commit(self):
+        self.fs.mv(self.path, self.target)
+
+    def discard(self):
+        self.fs.rm(self.path)
+
+    def _fetch_range(self, start, end):
+        """Get bytes between given byte limits
+
+        Implemented by raising an exception in the fetch callback when the
+        number of bytes received reaches the requested amount.
+
+        Will fail if the server does not respect the REST command on
+        retrieve requests.
+        """
+        out = []
+        total = [0]
+
+        def callback(x):
+            total[0] += len(x)
+            if total[0] > end - start:
+                out.append(x[: (end - start) - total[0]])
+                if end < self.size:
+                    raise TransferDone
+            else:
+                out.append(x)
+
+            if total[0] == end - start and end < self.size:
+                raise TransferDone
+
+        try:
+            self.fs.ftp.retrbinary(
+                f"RETR {self.path}",
+                blocksize=self.blocksize,
+                rest=start,
+                callback=callback,
+            )
+        except TransferDone:
+            try:
+                # stop transfer, we got enough bytes for this block
+                self.fs.ftp.abort()
+                self.fs.ftp.getmultiline()
+            except Error:
+                self.fs._connect()
+
+        return b"".join(out)
+
+    def _upload_chunk(self, final=False):
+        self.buffer.seek(0)
+        self.fs.ftp.storbinary(
+            f"STOR {self.path}", self.buffer, blocksize=self.blocksize, rest=self.offset
+        )
+        return True
+
+
+def _mlsd2(ftp, path="."):
+    """
+    Fall back to using `dir` instead of `mlsd` if not supported.
+
+    This parses a Linux style `ls -l` response to `dir`, but the response may
+    be platform dependent.
+
+    Parameters
+    ----------
+    ftp: ftplib.FTP
+    path: str
+        Expects to be given path, but defaults to ".".
+    """
+    lines = []
+    minfo = []
+    ftp.dir(path, lines.append)
+    for line in lines:
+        split_line = line.split()
+        if len(split_line) < 9:
+            continue
+        this = (
+            split_line[-1],
+            {
+                "modify": " ".join(split_line[5:8]),
+                "unix.owner": split_line[2],
+                "unix.group": split_line[3],
+                "unix.mode": split_line[0],
+                "size": split_line[4],
+            },
+        )
+        if this[1]["unix.mode"][0] == "d":
+            this[1]["type"] = "dir"
+        else:
+            this[1]["type"] = "file"
+        minfo.append(this)
+    return minfo