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"""Module contains tests for gn3.partial_correlations"""
from unittest import TestCase
from gn3.partial_correlations import control_samples
sampleslist = ["B6cC3-1", "BXD1", "BXD12", "BXD16", "BXD19", "BXD2"]
control_traits = (
{
"mysqlid": 36688172,
"data": {
"B6cC3-1": {
"sample_name": "B6cC3-1", "value": 7.51879, "variance": None,
"ndata": None},
"BXD1": {
"sample_name": "BXD1", "value": 7.77141, "variance": None,
"ndata": None},
"BXD12": {
"sample_name": "BXD12", "value": 8.39265, "variance": None,
"ndata": None},
"BXD16": {
"sample_name": "BXD16", "value": 8.17443, "variance": None,
"ndata": None},
"BXD19": {
"sample_name": "BXD19", "value": 8.30401, "variance": None,
"ndata": None},
"BXD2": {
"sample_name": "BXD2", "value": 7.80944, "variance": None,
"ndata": None}}},
{
"mysqlid": 36688172,
"data": {
"B6cC3-21": {
"sample_name": "B6cC3-1", "value": 7.51879, "variance": None,
"ndata": None},
"BXD21": {
"sample_name": "BXD1", "value": 7.77141, "variance": None,
"ndata": None},
"BXD12": {
"sample_name": "BXD12", "value": 8.39265, "variance": None,
"ndata": None},
"BXD16": {
"sample_name": "BXD16", "value": 8.17443, "variance": None,
"ndata": None},
"BXD19": {
"sample_name": "BXD19", "value": 8.30401, "variance": None,
"ndata": None},
"BXD2": {
"sample_name": "BXD2", "value": 7.80944, "variance": None,
"ndata": None}}},
{
"mysqlid": 36688172,
"data": {
"B6cC3-1": {
"sample_name": "B6cC3-1", "value": 7.51879, "variance": None,
"ndata": None},
"BXD1": {
"sample_name": "BXD1", "value": 7.77141, "variance": None,
"ndata": None},
"BXD12": {
"sample_name": "BXD12", "value": None, "variance": None,
"ndata": None},
"BXD16": {
"sample_name": "BXD16", "value": None, "variance": None,
"ndata": None},
"BXD19": {
"sample_name": "BXD19", "value": None, "variance": None,
"ndata": None},
"BXD2": {
"sample_name": "BXD2", "value": 7.80944, "variance": None,
"ndata": None}}})
class TestPartialCorrelations(TestCase):
"""Class for testing partial correlations computation functions"""
def test_control_samples(self):
"""Test that the control_samples works as expected."""
self.assertEqual(
control_samples(control_traits, sampleslist),
((("B6cC3-1", "BXD1", "BXD12", "BXD16", "BXD19", "BXD2"),
("BXD12", "BXD16", "BXD19", "BXD2"),
("B6cC3-1", "BXD1", "BXD2")),
((7.51879, 7.77141, 8.39265, 8.17443, 8.30401, 7.80944),
(8.39265, 8.17443, 8.30401, 7.80944),
(7.51879, 7.77141, 7.80944)),
((None, None, None, None, None, None), (None, None, None, None),
(None, None, None)),
(6, 4, 3)))
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