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from gn3.csvcmp import csv_diff
from gn3.csvcmp import fill_csv
from gn3.csvcmp import remove_insignificant_edits
import pytest
@pytest.mark.unit_test
def test_fill_csv():
test_input = """
Strain Name,Value,SE,Count
BXD1,18,x,0
BXD12,16,x,x
BXD14,15,x,x
BXD15,14,x,x
"""
expected_output = """Strain Name,Value,SE,Count,Sex
BXD1,18,x,0,x
BXD12,16,x,x,x
BXD14,15,x,x,x
BXD15,14,x,x,x"""
assert(fill_csv(test_input, width=5, value="x"))
@pytest.mark.unit_test
def test_remove_insignificant_data():
diff_data = {
'Additions': [],
'Deletions': [],
'Modifications': [
{'Current': '1.000001,3', 'Original': '1,3'},
{'Current': '1,3', 'Original': '1.000001,3'},
{'Current': '2.000001,3', 'Original': '2,2'},
{'Current': '1.01,3', 'Original': '1,2'}
]
}
expected_json = {
'Additions': [],
'Deletions': [],
'Modifications': [
{'Current': '2,3', 'Original': '2,2'},
{'Current': '1.01,3', 'Original': '1,2'}
]
}
assert (remove_insignificant_edits(diff_data) ==
expected_json)
@pytest.mark.unit_test
def test_csv_diff():
test_results = csv_diff(base_csv="a,b\n1,2\n",
delta_csv="a,b\n1,3")
_json = {
'Additions': [],
'Deletions': [],
'Modifications': [{'Current': '1,3', 'Original': '1,2'}]
}
assert(test_results.get("code") == 0 and
test_results.get("output") == _json)
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