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"""Tests for db/phenotypes.py"""
from unittest import TestCase
from unittest import mock
import pytest
from gn3.db import update
from gn3.db import diff_from_dict
from gn3.db.phenotypes import Phenotype
class TestCrudMethods(TestCase):
"""Test cases for CRUD methods"""
@pytest.mark.unit_test
def test_update_phenotype_with_no_data(self):
"""Test that a phenotype is updated correctly if an empty Phenotype dataclass
is provided
"""
db_mock = mock.MagicMock()
self.assertEqual(update(
conn=db_mock, table="Phenotype",
data=Phenotype(), where=Phenotype()), None)
@pytest.mark.unit_test
def test_update_phenotype_with_data(self):
"""
Test that a phenotype is updated correctly if some
data is provided
"""
db_mock = mock.MagicMock()
with db_mock.cursor() as cursor:
type(cursor).rowcount = 1
self.assertEqual(update(
conn=db_mock, table="Phenotype",
data=Phenotype(
pre_pub_description="Test Pre Pub",
submitter="Rob",
post_pub_description="Test Post Pub"),
where=Phenotype(id_=1, owner="Rob")), 1)
cursor.execute.assert_called_once_with(
"UPDATE Phenotype SET "
"Pre_publication_description = %s, "
"Post_publication_description = %s, "
"Submitter = %s WHERE id = %s AND Owner = %s",
('Test Pre Pub', 'Test Post Pub', 'Rob', 1, 'Rob'))
@pytest.mark.unit_test
def test_diff_from_dict(self):
"""Test that a correct diff is generated"""
self.assertEqual(diff_from_dict({"id": 1, "data": "a"},
{"id": 2, "data": "b"}),
{"id": {"old": 1, "new": 2},
"data": {"old": "a", "new": "b"}})
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