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"""Test cases for gn3.db.case_attributes.py"""
import pytest
import tempfile
import os
from pytest_mock import MockFixture
from gn3.db.case_attributes import queue_edit
from gn3.db.case_attributes import CaseAttributeEdit
from gn3.db.case_attributes import approve_case_attribute
@pytest.mark.unit_test
def test_queue_edit(mocker: MockFixture) -> None:
mock_conn = mocker.MagicMock()
with mock_conn.cursor() as cursor:
type(cursor).lastrowid = 28
TMPDIR = os.environ.get("TMPDIR", tempfile.gettempdir())
review_ids = queue_edit(
cursor,
directory=TMPDIR,
edit=CaseAttributeEdit(inbredset_id=1, user_id="xxxx", changes={"a": 1, "b": 2}))
cursor.execute.assert_called_once_with(
"INSERT INTO "
"caseattributes_audit(status, editor, json_diff_data) "
"VALUES (%s, %s, %s) "
"ON DUPLICATE KEY UPDATE status=%s",
('review', 'xxxx', '{"a": 1, "b": 2}', 'review'))
assert {28} == review_ids
@pytest.mark.unit_test
def test_approve_inserting_case_attribute(mocker: MockFixture) -> None:
"""Test approving inserting a case-attribute"""
mock_conn = mocker.MagicMock()
with mock_conn.cursor() as cursor:
type(cursor).rowcount = 1
cursor.fetchone.return_value = (
"""
{"Insert": {"name": "test", "description": "Random Description"}}
""",
)
_ = approve_case_attribute(
mock_conn,
case_attr_audit_id=3,
)
calls = [
mocker.call(
"SELECT json_diff_data FROM caseattributes_audit "
"WHERE id = %s",
(3,),
),
mocker.call(
"INSERT INTO CaseAttribute "
"(Name, Description) VALUES "
"(%s, %s)",
(
"test",
"Random Description",
),
),
mocker.call(
"UPDATE caseattributes_audit SET "
"status = 'approved' WHERE id = %s",
(3,),
),
]
cursor.execute.assert_has_calls(calls, any_order=False)
@pytest.mark.unit_test
def test_approve_deleting_case_attribute(mocker: MockFixture) -> None:
"""Test deleting a case-attribute"""
mock_conn = mocker.MagicMock()
with mock_conn.cursor() as cursor:
type(cursor).rowcount = 1
cursor.fetchone.return_value = (
"""
{"Deletion": {"id": "12", "name": "test", "description": ""}}
""",
)
_ = approve_case_attribute(
mock_conn,
case_attr_audit_id=3,
)
calls = [
mocker.call(
"SELECT json_diff_data FROM caseattributes_audit "
"WHERE id = %s",
(3,),
),
mocker.call("DELETE FROM CaseAttribute WHERE Id = %s", ("12",)),
mocker.call(
"UPDATE caseattributes_audit SET "
"status = 'approved' WHERE id = %s",
(3,),
),
]
cursor.execute.assert_has_calls(calls, any_order=False)
@pytest.mark.unit_test
def test_approve_modifying_case_attribute(mocker: MockFixture) -> None:
"""Test modifying a case-attribute"""
mock_conn = mocker.MagicMock()
with mock_conn.cursor() as cursor:
type(cursor).rowcount = 1
cursor.fetchone.return_value = (
"""
{
"id": "12",
"Modification": {
"description": {
"Current": "Test",
"Original": "A"
},
"name": {
"Current": "Height (A)",
"Original": "Height"
}
}
}""",
)
_ = approve_case_attribute(
mock_conn,
case_attr_audit_id=3,
)
calls = [
mocker.call(
"SELECT json_diff_data FROM caseattributes_audit "
"WHERE id = %s",
(3,),
),
mocker.call(
"UPDATE CaseAttribute SET Description = %s WHERE Id = %s",
(
"Test",
"12",
),
),
mocker.call(
"UPDATE CaseAttribute SET Name = %s WHERE Id = %s",
(
"Height (A)",
"12",
),
),
mocker.call(
"UPDATE caseattributes_audit SET "
"status = 'approved' WHERE id = %s",
(3,),
),
]
cursor.execute.assert_has_calls(calls, any_order=False)
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