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"""integration tests for wgcna"""
from unittest import TestCase
from unittest import mock
from gn3.app import create_app
class WgcnaIntegrationTest(TestCase):
"""class contains wgcna integration tests"""
def setUp(self):
self.app = create_app().test_client()
@mock.patch("gn3.api.wgcna.call_wgcna_script")
def test_wgcna_endpoint(self, mock_wgcna_api):
"""test /api/wgcna/run_wgcna endpoint"""
wgcna_api_data = {
"eigengenes": ["1224_at", "121412_at", "32342342-at"],
"dendrogram_file_location": "/tmp/dend1.png"
}
mock_wgcna_api.return_value = wgcna_api_data
request_data = {
"trait_sample_data": [],
}
response = self.app.post("/api/wgcna/run_wgcna",
json=request_data, follow_redirects=True)
self.assertEqual(response.status_code, 200)
self.assertEqual(response.get_json(), wgcna_api_data)
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