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"""Test fixtures to set up a test named graph for loading RDF data."""
import os
import pytest
import requests
from requests.auth import HTTPDigestAuth
def get_sparql_auth_conf(config_obj) -> dict:
"""Fetch SPARQL auth configuration from the configuration object."""
return {
"sparql_user": config_obj["SPARQL_USER"],
"sparql_auth_uri": config_obj["SPARQL_AUTH_URI"],
"sparql_crud_auth_uri": config_obj["SPARQL_CRUD_AUTH_URI"],
"sparql_endpoint": config_obj["SPARQL_ENDPOINT"],
"sparql_password": config_obj["SPARQL_PASSWORD"],
}
# XXXX: Currently we run the tests against CD's virtuoso instance.
# This is not idempotent. Consider having a special virtuoso instance
# just for running tests.
@pytest.fixture(scope="module")
def rdf_setup(fxtr_app_config):
"""Upload RDF to a Virtuoso named graph"""
# Define the URL and file
sparql_conf = get_sparql_auth_conf(fxtr_app_config)
url = sparql_conf["sparql_crud_auth_uri"]
file_path = os.path.join(
os.path.dirname(__file__).split("fixtures")[0],
"test_data/ttl-files/test-data.ttl",
)
# Define the query parameters and authentication
params = {"graph": "http://cd-test.genenetwork.org"}
auth = HTTPDigestAuth(
sparql_conf["sparql_user"], sparql_conf["sparql_password"])
# Make sure this graph does not exist before running anything
requests.delete(url, params=params, auth=auth)
# Open the file in binary mode and send the request
with open(file_path, "rb") as file:
response = requests.put(url, params=params, auth=auth, data=file)
yield response
requests.delete(url, params=params, auth=auth)
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