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#!/usr/bin/env python
"""Basic setup script for gn3"""
from setuptools import setup, find_packages # type: ignore
from setup_commands import RunTests
def long_description():
"""Retrieve long description from the README file."""
with open('README.md', encoding="utf-8") as readme:
return readme.read()
setup(author='Bonface M. K.',
author_email='me@bonfacemunyoki.com',
description=('GeneNetwork3 REST API for data '
'science and machine learning'),
install_requires=[
"click",
"Flask>=1.1.2",
"mypy>=0.790",
"mypy-extensions>=0.4.3",
"mysqlclient>=2.0.1",
"numpy>=1.20.1",
"pylint>=2.5.3",
"pymonad",
"redis>=3.5.3",
"requests>=2.25.1",
"scipy>=1.6.0",
"plotly>=4.14.3",
"pyld",
"flask-cors", # with the `>=3.0.9` specification, it breaks the build
# "xapian-bindings" # this line breaks `guix shell …` for some reason
],
include_package_data=True,
scripts=["scripts/index-genenetwork"],
license='GPLV3',
long_description=long_description(),
long_description_content_type='text/markdown',
name='gn3',
packages=find_packages(),
url='https://github.com/genenetwork/genenetwork3',
version='3.12',
tests_require=[
"pytest",
"hypothesis",
"pytest-mock"
],
cmdclass={
"run_tests": RunTests ## testing
})
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